Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq284051 114 1e-20 seq207829 98.7 1e-15 >seq284051 Length=2145588 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| |||||||| || | |||||||||||| || | |||||||| | ||||| || | Sbjct 1497777 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAACCCTCTCTTCT 1497836 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||| || ||||| ||||| || || || ||||| || ||||| ||||||||||||| Sbjct 1497837 TCAGCCAAAAGATAGATGCAAAGGAGCCGGAGAAGAAGATTCCTTCCACTGCTGCAAAAG 1497896 Query 19103 CAACTAGTCTTTCTCC 19118 | |||| | |||||| Sbjct 1497897 CTACTACACGTTCTCC 1497912 Score = 96.9 bits (106), Expect = 4e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 19221 TGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTAT 19280 || |||||||| || | ||||| | | |||||||||||||||||| |||||||| || Sbjct 1500441 TGGATCTTTAATGTAAGTGTCTATGAGCAGACTGTACATTTCTGAATGTATATTTTCCAT 1500500 Query 19281 AGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTC 19328 ||| ||||| || || || ||| | | ||||| |||||||||||||| Sbjct 1500501 AGCAATCTGGAAGCCATAGAAAAAGCGAGCTTCAGTTATCTGTACTTC 1500548 Score = 84.2 bits (92), Expect = 2e-11 Identities = 104/141 (74%), Gaps = 6/141 (4%) Strand=Plus/Plus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT---CATTACTCCCAT 18668 |||||| || |||||| || ||||| || ||| | || || |||||||||||| Sbjct 1496246 TTAAAAGTCTGCATCCAGAGTGAAAGAGTTATCTG---TGGATTTTGACATTACTCCCAT 1496302 Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 || || ||||| | |||| || |||||||| ||||| ||||| || | ||| ||| Sbjct 1496303 CTTCTGGTATTCTCCTACTCGCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAGATATT 1496362 Query 18729 TTCCATAAAATCAAATGGATT 18749 ||||| || ||||||||||| Sbjct 1496363 CTCCATGAAGTCAAATGGATT 1496383 >seq207829 Length=4015 Score = 98.7 bits (108), Expect = 1e-15 Identities = 123/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| |||||||||||||| || || | ||| ||| | || |||| |||||| || | Sbjct 1333 TCCACCCATAGAAATGCATGCTGGTGAGTTTGCCATAGTTGGGCTCTGCAATATGGATGT 1274 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | || || || |||||||| || || || ||||| ||||||||||| | | ||| | Sbjct 1273 TCAGGGACTGGCTCTGATCGATGAAAGCGCCTCTGTCAGCTGCCATTTTGAGAATGGTCT 1214 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218 | || | || ||||| ||||| ||||| | || || | ||| ||||| Sbjct 1213 TCTGGGAGATTTCCCAGACTGTCTTATAGAGCTGCTTCAAGTCATCTGG 1165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560094904696800