Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq285313 113 4e-19 seq283960 86.0 5e-11 >seq285313 Length=1148134 Score = 113 bits (124), Expect = 4e-19 Identities = 111/142 (78%), Gaps = 1/142 (1%) Strand=Plus/Plus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| ||||||| | || |||||||| || || |||||||| || || || || || Sbjct 650164 GTTACTAATGCAGTGGTCACAGTACCAGCCTACTTCAATGACTCTCAGCGCCAGGCCACA 650223 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||||||| ||||| || |||||||| || | || ||||||||||| |||||| Sbjct 650224 AAAGATGCTGGAACCATTGCGGGTCTTAATGTGCTCAGGATCATCAATGAACCGACTGCT 650283 Query 550511 GCTGCACTTGCATATGGACTTG 550532 ||||| |||| || || |||| Sbjct 650284 GCTGCTATTGCTTACGG-CTTG 650304 Score = 91.5 bits (100), Expect = 1e-12 Identities = 133/186 (72%), Gaps = 4/186 (2%) Strand=Plus/Plus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 || || ||| | || |||||||| |||||||| || | ||| |||| || || || Sbjct 648429 GGAATTGATCTTGGCACCACATACTCCTGTGTTGGGGTCTTCCAACATGGCAAGGTGGAG 648488 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 || ||||| |||||||| || ||||| || || ||| ||| ||| | ||||| || || Sbjct 648489 ATCATTGCTAATGATCAGGGCAACAGGACCACGCCAAGTTACGTTGCCTTCACCGATACA 648548 Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCAAGC--CACTGGTAATCCTACCAATACTA 550175 ||| | | |||||||| ||||| | |||| || || ||||||||||| || Sbjct 648549 GAAAGGCTGATCGGTGATGCTGCAAAGAACCAAGTTGCAATG--AATCCTACCAACACAG 648606 Query 550176 TTTTTG 550181 |||||| Sbjct 648607 TTTTTG 648612 >seq283960 Length=8219379 Score = 86.0 bits (94), Expect = 5e-11 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 563292 AATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCT 563351 ||||||||| |||| || || | | |||||| | ||||| || |||||||||||||| Sbjct 1376960 AATATTGTAGTCAGACAGCGTCCGTCCATCTTCCAACTGTTTGCCAGCAAAAATAAGTCT 1376901 Query 563352 TTGCTGATCAGGAGGAATTCCT 563373 ||| |||||||||||||||||| Sbjct 1376900 TTGTTGATCAGGAGGAATTCCT 1376879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4014138241743800