Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq283893 95.1 1e-14 seq285165 84.2 2e-11 >seq283893 Length=4807905 Score = 95.1 bits (104), Expect = 1e-14 Identities = 126/175 (72%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 30143 CTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTC 30202 |||| |||| || |||| || || || || || ||||||||||| || ||||| |||| Sbjct 4761396 CTGCATTCATATCTTTGTATTCAGCCCCAAAGTGTCTCCACTGGAAACCATACACTGGTC 4761455 Query 30203 CCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGT 30262 ||| || || || || || | | ||| || || ||||| ||||| | || || | Sbjct 4761456 CCAAATCCCCTTCCTCTCTCTTATTGAAACCTTGTTTATCCAAGAAGTCACGTGATCCAT 4761515 Query 30263 TGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 |||| ||||| ||||| || || || | ||||||||||| | ||||| || || Sbjct 4761516 TGGCATCCCAAATCTTCACTCCTTTTGCAGAGAGCTCTTTAGCATTTGTTGAACC 4761570 >seq285165 Length=8217138 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 || ||||| || || || |||| || || || ||| | | ||| | |||||| || || Sbjct 4017443 TTGAGCTCTCTACTAAGCACTATATTAATTCTATCTTTTAAAGGGCGATTCTTCTCAGGA 4017502 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCTCTG 112212 || |||||||||||| | ||||||||||||| ||| ||||| || ||| || Sbjct 4017503 ATAGAGAACCAAGTCCTCCTACCCATTATCAACACATTCTGTTTACCTGTG 4017553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 407190224661260