Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq162555 100 5e-16 seq209978 93.3 8e-14 seq283574 84.2 4e-11 >seq162555 Length=1600 Score = 100 bits (110), Expect = 5e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 213821 CATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCAC 213880 |||||| || || || | ||| || || |||||||||||||| | | ||| ||| Sbjct 655 CATGAAGAGATCAGGAATCCAGAGGGCAAAGAACAGGTCCCTGGCTCGCTGCTCCTCCTT 596 Query 213881 TCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTA 213940 |||| ||| || ||| || ||||| |||||||| ||| ||||||||||||| ||| Sbjct 595 CCCAGTGTTCTTCTTCAGGTCAAGAAACTCAAAGATATCCAAATGCCACGGCTCCAGGTA 536 Query 213941 GATGGCAAAGGCGCCCGGCCTCT 213963 |||||||||||| || || |||| Sbjct 535 GATGGCAAAGGCCCCAGGTCTCT 513 >seq209978 Length=1003 Score = 93.3 bits (102), Expect = 8e-14 Identities = 120/164 (73%), Gaps = 4/164 (2%) Strand=Plus/Plus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||||| || || ||||||||||||||||| |||||| ||||||||||| ||| Sbjct 455 GTGTACTCCACTATTTCTGTGCACAGGTTGCTGCACTTGATGGTTCCCAGGTTCTGCTGG 514 Query 213588 TTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGG 213647 || ||| || ||| |||||||| | |||||| |||| || ||||| ||| Sbjct 515 TTGCTCTTCCTATTACAAGAGTCCTTGTACAACATGTAAGGGGTTCCTGTCTCGGTCTGA 574 Query 213648 GACACCAGTATCTGGC--TCCAGAGGTACCTGGCCTTGACCACC 213689 ||| | | | |||| |||||| | | |||||| |||||| Sbjct 575 GACTCTATGA--TGGCATACCAGAGCTGCTGGGCCTTCACCACC 616 >seq283574 Length=3212210 Score = 84.2 bits (92), Expect = 4e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214 || || | ||| |||||| | |||||||| || |||||||| | ||||||| || Sbjct 1560528 TCATCTCTGCTAATGAGCTCATTGGAGAATGTCAGTCCAGGCATAAGACCCCTCTTCTTC 1560469 Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 ||||| || || || || ||||| || ||||||||||| || |||||||| || || || Sbjct 1560468 AGCCAAAATATAGCAGCAAAAGAACCCGAGAAGAAGATTCCTTCCACTGCAGCAAAGGC 1560410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928195350860800