Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq283574 93.3 8e-14 seq162555 87.8 3e-12 >seq283574 Length=3212210 Score = 93.3 bits (102), Expect = 8e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 |||| ||||||||||| ||||| || ||||| ||| ||||| ||||| || || || | Sbjct 1560405 TGGTTGCCTTTGCTGCAGTGGAAGGAATCTTCTTCTCGGGTTCTTTTGCTGCTATATTTT 1560464 Query 25943 GGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGG 26002 |||| ||| ||| ||| ||||| || ||| || ||||| |||||||| ||||| | Sbjct 1560465 GGCTGAAGAAGAGGGGTCTTATGCCTGGACTGACATTCTCCAATGAGCTCATTAGCAGAG 1560524 Query 26003 ACGAGG 26008 | |||| Sbjct 1560525 ATGAGG 1560530 >seq162555 Length=1600 Score = 87.8 bits (96), Expect = 3e-12 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 222032 ACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGC 222091 |||| | ||||||||| || || ||||| || || || || || |||| |||||| Sbjct 663 ACCCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAACAGGTCCCTGGCTCGCTGC 604 Query 222092 TCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGC 222151 |||||| || |||| ||| |||| || | ||||||||| || || ||||||||| Sbjct 603 TCCTCCTTCCCAGTGTTCTTCTTCAGGTCAAGAAACTCAAAGATATCCAAATGCCACGGC 544 Query 222152 TCCAGATAGACGGCCAGAGCGCCGGGTCGCT 222182 ||||| |||| ||| | || || |||| || Sbjct 543 TCCAGGTAGATGGCAAAGGCCCCAGGTCTCT 513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 925516981292800