Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq285313 118 7e-21 >seq285313 Length=1148134 Score = 118 bits (130), Expect = 7e-21 Identities = 224/327 (69%), Gaps = 2/327 (1%) Strand=Plus/Plus Query 475496 ACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTT 475555 || || ||||||||||||||||| |||| || ||| ||||| | | | ||||| || Sbjct 650637 ACAGCATGTGAACGTGCTAAGCGTACTCTCTCCTCTAGCACTCAGGCCAGTATTGAAATT 650696 Query 475556 GATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAATTTGAAGAT 475615 || || || | ||| || ||||| | | | || || || || ||| |||||||| Sbjct 650697 GACTCGCTCTATGAGGGCATTGACTTTTACACCTCAATAACCAGAGCTCGTTTTGAAGAG 650756 Query 475616 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCT 475675 | | ||||||| || | || | || || || || | | || | ||| | Sbjct 650757 TTAAATGCTGATCTGTTCCGTGGCACTCTGGATCCTGTAGAGAAGGCCCTGCGGGATGCC 650816 Query 475676 AAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCA 475735 ||||| |||||||||||| ||||||| ||||| || || || || ||||| | || || Sbjct 650817 AAACTAGACAAATCACAAATCCATGACATTGTACTGGTTGGCGGATCAACCCGTATCCCC 650876 Query 475736 AAAATAAGAGAAATGCTTTCATCATAT-TTTAATGGTAAAAAGTTAAATGAAAGTGTAAA 475794 || || ||||| | | || || | || ||||| ||| || | || | || | || Sbjct 650877 AAGAT-TCAGAAACTCCTGCAGGATTTCTTCAATGGGAAAGAGCTGAACAAGAGCATCAA 650935 Query 475795 TCCTGATGAAGCTGTTGCATATGGAGC 475821 ||||||||||||||| || ||||| || Sbjct 650936 TCCTGATGAAGCTGTGGCTTATGGTGC 650962 Score = 98.7 bits (108), Expect = 6e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 474728 GTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACT 474787 || ||| ||||||| | || || ||||| || || ||||| ||||| || || || || Sbjct 650164 GTTACTAATGCAGTGGTCACAGTACCAGCCTACTTCAATGACTCTCAGCGCCAGGCCACA 650223 Query 474788 AAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCA 474847 |||||||| |||| ||||| ||||||||||| | | || || |||||||| || || Sbjct 650224 AAAGATGCTGGAACCATTGCGGGTCTTAATGTGCTCAGGATCATCAATGAACCGACTGCT 650283 Query 474848 GCCGCACTTGCTTATGGTCTTGATAAGAA 474876 || || ||||||| || | || ||||| Sbjct 650284 GCTGCTATTGCTTACGGCTTGGACAAGAA 650312 Score = 95.1 bits (104), Expect = 8e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 476032 TGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGG 476091 |||||| || ||| | || ||||| || ||| || || | ||| | || || Sbjct 651995 TGAAGGGGAGAGAGCCATGACAAAAGACAACAACTTGCTGGGCAAGTTTGAGCTGACTGG 652054 Query 476092 TATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAA 476151 |||||||| ||||| ||||| || |||||||||||||| || |||||||||||||| || Sbjct 652055 CATTCCTCCAGCTCCAAGAGGTGTACCTCAAATTGAAGTAACATTTGATATTGATGCCAA 652114 Query 476152 TGGTATTCTTAATGTTACTGCT 476173 ||| || || ||||| ||||| Sbjct 652115 TGGCATCCTGAATGTGTCTGCT 652136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3255884677519760