Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq284884 197 2e-45 seq286078 111 2e-19 >seq284884 Length=8161990 Score = 197 bits (218), Expect = 2e-45 Identities = 646/993 (65%), Gaps = 13/993 (1%) Strand=Plus/Plus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 |||||| || || ||| |||| || || | || || |||||| || || |||| Sbjct 7516434 TGTGTCTCAAATATTCTTCCAAGCACTGAATTGCAAAGGGGTCAACATCAGTATCAAATT 7516493 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164 | || || || | ||||| ||||||| ||||||| || |||||| || || | Sbjct 7516494 TGTTAGCAAATAAGTGGTGT---TTCTGTAACATCCAGTTCAAGTCTCCCACTCCAAATA 7516550 Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224 | || || ||||| | || | || ||||| || || || | || ||||| | ||| | Sbjct 7516551 CACACACAGAACGCACATGAATTCCATTGCATGGAGGATAGGGGGCACCTTTTGACACAT 7516610 Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284 | || || | || ||||||||||||||||| || | || | |||||| || | || | Sbjct 7516611 CCCCCTCAAAATAATGCCACTTCACAAACCTTGCAAGAGCATTCATGTCAGAAATATCAT 7516670 Query 160285 ATTTGTACATCAGG--GGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCA 160342 | |||| || | || | ||| || || ||||| | || || | || | || ||||| Sbjct 7516671 ACTTGT-CA-CTGGAAGAAACTGCCCCTGGAACTTCAGGGATTCTTTGAATAGTAGCCCA 7516728 Query 160343 CAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCT 160402 || || ||| |||||||| || || || |||| |||||| || ||||| |||| || Sbjct 7516729 CAAGTATTCATCGGGGCTATATGTATCTTTAGCCCATTCAATAAACTCAAGGATTTTGCT 7516788 Query 160403 GTCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAA 160462 || || || | || | || | | ||||| || || ||||| ||||| Sbjct 7516789 GTTTTCTAGCACATACTCTACAAATCTCCTACTAGCAACAAAATAGGCACTGCCAGAGAA 7516848 Query 160463 TATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTT 160522 | || | | ||| || | | |||||| || |||| | || | Sbjct 7516849 AACAGGAGTACTGAGAGGTGGAGGTTGTTTGTCTATTCCCATGTTCTTTAATTTACCATC 7516908 Query 160523 CACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGC--GGTGGCATGCGTTCCGTC 160580 || | | | | || ||||| | | |||| ||| | ||||| || || Sbjct 7516909 AACGATTTCATAGTGTTTTTTCCATC-GTATTTCTT-TGCTGGAAGGCATTTTCTCAGTT 7516966 Query 160581 TCTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTG 160640 |||| ||||| |||| | | | ||||| | || || || || |||| ||||| Sbjct 7516967 TCTAAGCTGTTTTCACCCTTTAAGGCTTTCAATTTCTCCACTATTTCCTGGTTGGTCTTA 7517026 Query 160641 AGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGC 160700 | |||||||| |||| || || ||||||| || ||||| || | || || Sbjct 7517027 ATAGGAAAGTCCATACCACATAAATTTATCAAATATTTCCAGTTTGTACTTCTTCTGTAG 7517086 Query 160701 AGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTC 160760 || || ||||||| || | || ||||| || | |||||| ||||| |||||||| | Sbjct 7517087 AGATCTTTCATGCAGTTGAGGTCAGCCTGTACCCTGCTCCATGAAGCATACACTACACTT 7517146 Query 160761 TCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGA 160820 || | || ||||| | |||||| |||| |||||| ||||| |||||| || | ||| Sbjct 7517147 TCCAATTGGCTGGCAATAAAGACATTATTGAAACAGGACACAATTCCCTTAACTG-CAGC 7517205 Query 160821 AAGAACATCTTAT-CCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTA 160879 |||| | || | | |||| ||| || || | ||| || |||||||| || || Sbjct 7517206 CAGAAAAGATTCTGGAGACTTTTTGTCAACATGAATGCAGTAATAATTCTGAGGTGCATA 7517265 Query 160880 GATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGC 160939 ||| | || || | || || | ||| ||||| || |||| || || || || ||||| Sbjct 7517266 GATTGATCTTAGAAGTCTATCAAGCATGTCTATTTTGTGATATATGACTATTGAATAGGC 7517325 Query 160940 TATCGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGAT 160999 || ||||| || | || || ||| || | | || | ||||| ||| | ||| | Sbjct 7517326 AATTGGAAATTCAGCTTCTTCTTTACTGAGAGGTTCCGTAATATACTTCCGCATTTTGGT 7517385 Query 161000 AAAATAATCACAATCCCGCGTCATGTTGATATA 161032 |||| | |||||||| |||||| || ||||| Sbjct 7517386 AAAAGAGGCACAATCCATCGTCATATTAATATA 7517418 >seq286078 Length=3490189 Score = 111 bits (122), Expect = 2e-19 Identities = 102/129 (79%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 160843 GGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGA 160902 |||||||||| ||||| || | |||||| ||||||||||||| || |||| |||||||| Sbjct 2759517 GGTCCACGTGGACGCAGTAGATGTTCTGGGGCGCGTAGATGGACCGCAGCAGCCTCTCGA 2759576 Query 160903 ACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAACTCGGTCTCCTCGC 160962 ||||||| ||||| | || | ||| || |||||||| ||||| || || |||||| Sbjct 2759577 ACATCTCGATCTTCTCGTGCACCACCATGGAGTAGGCGATCGGGAAATCCTCCTCCTCCT 2759636 Query 160963 GACTCAGGG 160971 ||||||| Sbjct 2759637 TGCTCAGGG 2759645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 575151167911200