Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq285313 251 9e-62 seq195072 168 9e-37 seq284675 150 2e-31 seq283112 109 7e-19 seq285824 107 3e-18 seq283960 95.1 2e-14 seq130642 89.7 7e-13 seq283574 84.2 3e-11 >seq285313 Length=1148134 Score = 251 bits (278), Expect = 9e-62 Identities = 379/539 (70%), Gaps = 0/539 (0%) Strand=Plus/Plus Query 195866 AATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAA 195925 ||||| | |||||||| || || ||||| || || ||||| ||| | |||| |||||| Sbjct 650424 AATGTCCTTATCTTTGACCTTGGGGGTGGCACTTTCGATGTTTCAATCCTCACTATTGAG 650483 Query 195926 GGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTC 195985 | ||| || || ||||| ||| | |||||||||||||| || | ||||| || || || Sbjct 650484 GATGGCATCTTTGAAGTGAAGTCAACTGCTGGTGATACCCACTTGGGTGGGGAGGACTTT 650543 Query 195986 GATGCACGTCTTCTCCGTCATTTGTCTGATGAGTTCCGTCGAAAGAATAAGAAAGATATT 196045 ||| ||| | || |||||| || ||| ||| || ||| | ||||| || ||| Sbjct 650544 GATAACCGTATGGTCAATCATTTCATTGCTGAATTCAAGCGTAAGCACAAGAAGGACATT 650603 Query 196046 TCTGGAAATCCTAGGGCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACT 196105 ||| || || || |||| ||||| | || |||||||||||||| || || ||| Sbjct 650604 ACTGAGAACAAGAGAGCAGTTCGCCGGCTACGCACAGCATGTGAACGTGCTAAGCGTACT 650663 Query 196106 CTCTCTTCTACGGCTCAAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTC 196165 ||||| |||| |||| | | |||| ||||| ||| | | ||| || |||||||| Sbjct 650664 CTCTCCTCTAGCACTCAGGCCAGTATTGAAATTGACTCGCTCTATGAGGGCATTGACTTT 650723 Query 196166 TATACAACTATTACCCGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGT 196225 || || | || ||| | || ||||||||||||||||| ||||| |||| | | Sbjct 650724 TACACCTCAATAACCAGAGCTCGTTTTGAAGAGTTAAATGCTGATCTGTTCCGTGGCACT 650783 Query 196226 ATGGAACCTGTTGAACAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAA 196285 |||| ||||| || | | || || || || || | || || || | | |||| Sbjct 650784 CTGGATCCTGTAGAGAAGGCCCTGCGGGATGCCAAACTAGACAAATCACAAATCCATGAC 650843 Query 196286 ATTGTCCTTGTGGGAGGATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTC 196345 ||||| || || || |||||||||||||| || |||||||| | | || ||| Sbjct 650844 ATTGTACTGGTTGGCGGATCAACCCGTATCCCCAAGATTCAGAAACTCCTGCAGGATTTC 650903 Query 196346 TTCAATAATAAAGATTTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGC 196404 |||||| ||||| | ||||| | ||||| || |||||||| || ||||||||||| Sbjct 650904 TTCAATGGGAAAGAGCTGAACAAGAGCATCAATCCTGATGAAGCTGTGGCTTATGGTGC 650962 Score = 116 bits (128), Expect = 5e-21 Identities = 113/143 (79%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 195708 ATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACG 195767 ||||||| || || ||||| || ||||||| ||| || || || ||||| ||||| || | Sbjct 650171 ATGCAGTGGTCACAGTACCAGCCTACTTCAATGACTCTCAGCGCCAGGCCACAAAAGATG 650230 Query 195768 CTGCTGCTATTGCGGGTCTAAACTGT-CTTAGAATTATCAATGAACCAACAGCGGCTGCA 195826 ||| | ||||||||||| || ||| || || || ||||||||||| || || ||||| Sbjct 650231 CTGGAACCATTGCGGGTCTTAA-TGTGCTCAGGATCATCAATGAACCGACTGCTGCTGCT 650289 Query 195827 ATTGCTTATGGTCTGGACAAGAA 195849 |||||||| || |||||||||| Sbjct 650290 ATTGCTTACGGCTTGGACAAGAA 650312 Score = 84.2 bits (92), Expect = 3e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 195303 TTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGTGTAG 195362 |||| || ||| | || || || ||||| |||||||| || | ||| ||| || | Sbjct 648427 TTGGAATTGATCTTGGCACCACATACTCCTGTGTTGGGGTCTTCCAACATGGCAAGGTGG 648486 Query 195363 AGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGATA 195422 |||| || | ||||| || || ||| | || || ||| ||||||||||| || |||| Sbjct 648487 AGATCATTGCTAATGATCAGGGCAACAGGACCACGCCAAGTTACGTTGCCTTCACCGATA 648546 Query 195423 ATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACTG 195482 ||| | || | || ||||| ||||| || || || ||||| |||| ||| || | Sbjct 648547 CAGAAAGGCTGATCGGTGATGCTGCAAAGAACCAAGTTGCAATGAATCCTACCAACACAG 648606 Query 195483 TCTTTG 195488 | |||| Sbjct 648607 TTTTTG 648612 >seq195072 Length=1781 Score = 168 bits (186), Expect = 9e-37 Identities = 417/626 (67%), Gaps = 14/626 (2%) Strand=Plus/Plus Query 196247 CTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCA 196306 || ||||| || || | || ||| || || | || ||||| || ||||| || || Sbjct 42 CTGCGTGATGCCAAACTAGACAAGGGCCAGATTCAGGAGATTGTGCTGGTGGGCGGCTCC 101 Query 196307 ACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTT-CTTCAATAATAAAGATTTAAA 196365 ||||| || || ||||| || || | || | || || |||||| ||||| | || Sbjct 102 ACCCGCATCCCCAAGATCCAGAAGCTCCTC-CAAGATTTCTTCAACGGCAAAGAGCTCAA 160 Query 196366 CAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCT 196425 ||| | |||||||| || || || || |||||||| || || || ||||||||||| || Sbjct 161 CAAGAGCATCAACCCCGACGAGGCTGTAGCTTATGGCGCTGCAGTGCAGGCTGCTATCCT 220 Query 196426 CTCAGGTGTTGACAA---TAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGT 196482 | || | |||| | | ||||| || || | |||| || ||||| | || | Sbjct 221 CATGGGGG---ACAAGTCTGAGAACGTGCAGGACTTGTTGCTGCTCGATGTCACTCCTCT 277 Query 196483 ATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAAC 196542 ||| ||||| | || ||||| || || || ||||| | || | | ||||| || Sbjct 278 GTCCTTGGGTATCGAGACAGCCGGCGGAGTGATGACCGCCCTCATCAAGCGCAACACCAC 337 Query 196543 TATTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCA 196602 || || || ||| || || |||| | || || ||||| || ||| | || | Sbjct 338 CATCCCTACCAAGCAGACCCAGATCTTCACCACCTACTCCGACAACCAAAACAGCGTCCT 397 Query 196603 TATTCAAGTATATGAAGG--AGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAAC 196659 | || |||||||| || ||| ||| || | ||||| ||| |||| || || | Sbjct 398 GGTGCAGGTATATGAGGGTGAGAGGGCTA---TGACTAAGGACAACAATCTGCTGGGCAA 454 Query 196660 TTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTT 196719 ||||| ||||| || || || | || ||| | || || || ||||| | || ||| Sbjct 455 GTTCGACTTGACCGGCATACCCCCAGCTCCCCGCGGCGTCCCCCAGATCGAGGTAACCTT 514 Query 196720 CGATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATC 196779 |||||||||||| || || || || || ||||| || |||||| | || ||| Sbjct 515 CGATATAGACGCCAACGGCATCCTGAATGTCACTGCCTCTGACAAGAGCACGGGTAAAGA 574 Query 196780 TGAAAAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTAT 196839 | ||||| || ||||| |||||||| || || ||||| || ||||| || || Sbjct 575 GAACAAGATCACCATCACCAACGACAAGGGCCGTCTCAGCAAGGACGACATTGACCGAAT 634 Query 196840 GGTTCAAGATGCGGAAAAGTACAGGG 196865 ||| || || || || | ||||| || Sbjct 635 GGTGCAGGAGGCAGAGACGTACAAGG 660 >seq284675 Length=1105255 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| |||||||| |||||| | ||||| || || ||||| || || || ||| | Sbjct 341646 ATGCAGATCTTTGTAAAAACCTTGACTGGCAAGACCATCACGCTAGAAGTAGAGCCCAGT 341587 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || || |||| ||||| || || || || ||||||||||| || |||||| Sbjct 341586 GACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCAGATCAG 341527 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | | || |||||||| || ||||| |||||||| || ||||| | || |||||| Sbjct 341526 CAGAGGTTGATCTTTGCTGGGAAGCAGCTAGAAGATGGGCGCACCCTGTCAGACTACAAC 341467 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 | || || || || ||||| ||| | || || | || ||||||||| Sbjct 341466 ATCCAGAAAGAATCCACTCTGCACTTGGTCCTGCGCCTCCGGGGTGGT 341419 >seq283112 Length=259727 Score = 109 bits (120), Expect = 7e-19 Identities = 160/224 (71%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 196637 AAGGATAACCATCTACTTGGAACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGT 196696 ||||| |||||||| || || ||||| || ||||| || || || |||| || | ||| Sbjct 221422 AAGGACAACCATCTCCTGGGTACTTTTGACTTGACTGGAATCCCTCCTGCTCCTCGTGGT 221481 Query 196697 GTTCCACAGATTAATGTTTGCTTCGATATAGACGCAAATGGAATTCTAAACGTCACAGCT 196756 || ||||||||| | ||| ||| || ||||| | |||||||| || || ||||| Sbjct 221482 GTCCCACAGATTGAAGTTACCTTTGAGATAGATGTGAATGGAATCCTCCGTGTTACAGCA 221541 Query 196757 GAGGACAAGGCTTCTGGCAAATCTGAA-AAGATTGTGATTACCAATGACAAGGGGCGGCT 196815 || ||||||| |||| |||| || ||||| |||||||||||| || || || Sbjct 221542 GAAGACAAGGGCACTGG-AAATAAAAACAAGATCACAATTACCAATGACCAGAACCGCCT 221600 Query 196816 TTCTAAGGAGGAAATTGAACGTATGGTTCAAGATGCGGAAAAGT 196859 | ||||| ||||| | |||||| | ||||| || |||| Sbjct 221601 AACACCAGAGGAGATTGAGAGAATGGTTAATGATGCTGAGAAGT 221644 Score = 87.8 bits (96), Expect = 2e-12 Identities = 85/107 (79%), Gaps = 2/107 (2%) Strand=Plus/Plus Query 195708 ATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACG 195767 |||| ||||| ||||| || |||||||||| |||| | || || || || |||||||| | Sbjct 219061 ATGCTGTTGTCACTGTCCCAGCTTACTTCAATGATGCTCAGCGTCAAGCTACAAAGGATG 219120 Query 195768 CTGCTGCTATTGCGGGTCTAAACTGTCTT-AGAATTATCAATGAACC 195813 ||| | ||||||| || | || |||| | ||||| ||||||||||| Sbjct 219121 CTGGTACTATTGCAGGATTGAA-TGTCATGAGAATAATCAATGAACC 219166 >seq285824 Length=1342290 Score = 107 bits (118), Expect = 3e-18 Identities = 86/104 (83%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| ||||||||||| || || ||||| |||||||||||||| ||| | Sbjct 583338 ATGCAGATCTTCGTGAAAACCCTGACAGGCAAAACCATCACCCTCGAGGTGGAGCCCAGC 583279 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGG 171965 ||||| ||||| ||| |||| ||||||||||| || |||||||| Sbjct 583278 GACACCATCGAGAACGTCAAGGCCAAGATTCAGGACAAGGAAGG 583235 >seq283960 Length=8219379 Score = 95.1 bits (104), Expect = 2e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 171963 AGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACG 172022 ||| ||||| || ||||| ||| |||||||||||||||| |||||| | ||||||||||| Sbjct 1376879 AGGAATTCCTCCTGATCAACAAAGACTTATTTTTGCTGGCAAACAGTTGGAAGATGGACG 1376938 Query 172023 TACCCTCGCTGATTACAACGTTCAAAAGGAGTCTA 172057 || || |||| ||||| ||||||||| || || Sbjct 1376939 GACGCTGTCTGACTACAATATTCAAAAGGTGTGTA 1376973 >seq130642 Length=457 Score = 89.7 bits (98), Expect = 7e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||| || || ||||| || || |||||| | |||||||| | Sbjct 334 ATGCAGATCTTTGTGAAGACTCTGACTGGCAAGACCATCACCTTAGAGGTTGAACCCAGT 393 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || || || || | ||||||||||| || || || ||||||||||| || || ||| Sbjct 394 GATACCATTGAGAATGTGAAAGCCAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 453 Query 171982 CA 171983 || Sbjct 454 CA 455 >seq283574 Length=3212210 Score = 84.2 bits (92), Expect = 3e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 60183 AACCCGCTTTTCAAAGAAGTTTGTTTTACCATCCAACGAAATATTTTCCATAAAATCAAA 60242 ||||||||| ||||||||||||||||| || |||| |||||||| ||||| |||||||| Sbjct 2996971 AACCCGCTTCTCAAAGAAGTTTGTTTTTCCTTCCAGGGAAATATTCTCCATGAAATCAAA 2996912 Query 60243 GGGGTT 60248 ||||| Sbjct 2996911 AGGGTT 2996906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655505443486400