Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq283712 109 2e-18 >seq283712 Length=711602 Score = 109 bits (120), Expect = 2e-18 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 302616 AGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAG 302675 || ||| || || ||||||||||| ||||| |||| |||||||| || |||||||| | Sbjct 7087 AGCTGTCTTGACGGCTGTATCAATGAGACCCTCACGCCCACCCATGGCGTGGAAGAAGAA 7028 Query 302676 CTCTTCCGGTCGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCG 302734 ||| || ||| ||||| | | |||| |||| ||||| || || ||| ||| Sbjct 7027 CTCGGTGGG-CGTCAGCCCAGCCAGGTAGGAATTCTCCACGAAGCCCCGGCTCTCAGGCC 6969 Query 302735 AATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCT 302794 || ||| |||| | ||||| ||||| || | || || |||| ||||||| |||| Sbjct 6968 CATAGTCATCCTTGATGAAGTGGGGCAGCGTGCGGTGCTTGAAGCCAAATGGGATCCGCT 6909 Query 302795 TTCCATCAACGTTCTGCTGTCCCA 302818 | || || ||||||||||| |||| Sbjct 6908 TCCCCTCCACGTTCTGCTGCCCCA 6885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1466412616630940