Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq283102 158 1e-32 seq213526 143 3e-28 seq286588 93.3 5e-13 >seq283102 Length=42139 Score = 158 bits (174), Expect = 1e-32 Identities = 156/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| | ||||||||| |||||||||||||| || | | || Sbjct 31369 GCTTGGCCAGCTCCCCAGGCAGCAGCAGGCGCACAGCGGTCTGGATCTCCCGGGAGGTGA 31310 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||||||| ||||| | ||||||| |||| | Sbjct 31309 TGGTCGAGCGCTTGTTGTAATGCGCCAGACGGGACGCCTCCCCGGCGATGCGCTCGAAGA 31250 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| |||||||||||||||| ||| | |||| |||||| || |||||||| Sbjct 31249 TGTCGTTCACAAACGAGTTCATGATGCCCATGGCCTTGGAGGAGATCCCGGTGTCGGGGT 31190 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 ||||||| || ||||||||||| Sbjct 31189 GCACCTGTTTCAGCACCTTGTA 31168 Score = 145 bits (160), Expect = 9e-29 Identities = 154/202 (76%), Gaps = 1/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| | ||| ||||| |||||||||||||| || | | || Sbjct 16420 GCTTGGCCAGCTCCCCAGGCAGCAGCAG-CGCACAGCGGTCTGGATCTCCCGGGAGGTGA 16362 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| ||| ||||| | ||||||| |||| | Sbjct 16361 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGGGACGCCTCCCCGGCGATGCGCTCGAAGA 16302 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| |||||||||||||||| ||| | |||| |||||| || |||||||| Sbjct 16301 TGTCGTTCACAAACGAGTTCATGATGCCCATGGCCTTGGAGGAGATCCCGGTGTCGGGGT 16242 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 ||||||| || ||||||||||| Sbjct 16241 GCACCTGTTTCAGCACCTTGTA 16220 >seq213526 Length=744 Score = 143 bits (158), Expect = 3e-28 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 ||||| || || ||| | ||| ||||| |||||||||||||| || | | ||| || Sbjct 402 GCCAGCTCCCCAGGCAACAGCAGCCGCACAGCGGTCTGGATCTCCCGGGAGGTGATGGTC 343 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 ||||||||| | |||||||| ||| ||||| | ||||||| |||| |||||| Sbjct 342 GAGCGCTTGTTGTAATGCGCCAGGCGGGACGCCTCCCCGGCGATGCGCTCGAAGATGTCG 283 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 || |||||||||||||||| ||| | |||| |||||| || ||||||||||||| Sbjct 282 TTCACAAACGAGTTCATGATGCCCATGGCCTTGGAGGAGATCCCGGTGTCGGGGTGCACC 223 Query 1254528 TGCTTGAGCACCTTGTA 1254544 || || ||||||||||| Sbjct 222 TGTTTCAGCACCTTGTA 206 >seq286588 Length=107217 Score = 93.3 bits (102), Expect = 5e-13 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 1254368 CAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGC 1254427 |||||||||||||||||||||||| |||| | ||| || |||||||| | || Sbjct 13747 CAGGCGCACGGCGGTCTGGATCTCTCGCGAACTGATAGTCGATCGCTTGTTGTACAAAGC 13806 Query 1254428 CAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGAC 1254487 || || ||||||| | | ||||| |||| | ||| | || || || ||||||| Sbjct 13807 CAAGCGTGACGCCTCGGCGGCAATGCGCTCGAAGAGATCGCTCACGAAGGAATTCATGAT 13866 Query 1254488 CGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGA 1254546 ||| | ||| || || ||| ||| || ||||||||||| ||||||||||||| Sbjct 13867 GCTCATAGCCTTAGAAGAAATACCCGTGTCCGGATGCACCTGCTTCAGCACCTTGTAGA 13925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6083617820558540