Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq283102 201 2e-45 seq213526 188 1e-41 seq286588 120 5e-21 seq284484 105 1e-16 >seq283102 Length=42139 Score = 201 bits (222), Expect = 2e-45 Identities = 191/244 (78%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || |||||||| ||||| |||||||||||| ||||||| || || ||| Sbjct 31408 TGTACTTGGTAACAGCCTTGGTGCCCTCAGAGACGGCGTGCTTGGCCAGCTCCCCAGGCA 31349 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||||||| |||||||||||||| |||| | ||| || ||||||||| Sbjct 31348 GCAGCAGGCGCACAGCGGTCTGGATCTCCCGGGAGGTGATGGTCGAGCGCTTGTTGTAAT 31289 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||| ||| ||||| | ||||||| |||| |||||||| ||||||||||||| Sbjct 31288 GCGCCAGACGGGACGCCTCCCCGGCGATGCGCTCGAAGATGTCGTTCACAAACGAGTTCA 31229 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||||| || ||||||||||||||| || |||||||||| Sbjct 31228 TGATGCCCATGGCCTTGGAGGAGATCCCGGTGTCGGGGTGCACCTGTTTCAGCACCTTGT 31169 Query 1485710 AAAC 1485713 | || Sbjct 31168 ACAC 31165 Score = 188 bits (208), Expect = 1e-41 Identities = 189/244 (77%), Gaps = 1/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| |||||||| ||||| |||||||| || || |||||| ||||||| || || ||| Sbjct 16459 TGTATTTGGTGACAGCCTTAGTACCCTCAGACACAGCGTGCTTGGCCAGCTCCCCAGGCA 16400 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| ||||| |||||||||||||| |||| | ||| || ||||||||| Sbjct 16399 GCAGCAG-CGCACAGCGGTCTGGATCTCCCGGGAGGTGATGGTCGAGCGCTTGTTGTAAT 16341 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||||||| ||||| | ||||||| |||| |||||||| ||||||||||||| Sbjct 16340 GCGCCAGGCGGGACGCCTCCCCGGCGATGCGCTCGAAGATGTCGTTCACAAACGAGTTCA 16281 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||||| || ||||||||||||||| || |||||||||| Sbjct 16280 TGATGCCCATGGCCTTGGAGGAGATCCCGGTGTCGGGGTGCACCTGTTTCAGCACCTTGT 16221 Query 1485710 AAAC 1485713 | || Sbjct 16220 ACAC 16217 Score = 100 bits (110), Expect = 4e-15 Identities = 78/93 (84%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| || || |||||||||||||| |||||||||||| | ||||| || || ||| Sbjct 39957 TGTACTTAGTCACAGCCTTGGTACCCTCAGAGACGGCGTGCTTCGCCAGCTCCCCAGGCA 40016 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562 | ||| |||||||||||||||||||| |||| Sbjct 40017 GCAGCAGCCGCACGGCGGTCTGGATCTCCCGGG 40049 >seq213526 Length=744 Score = 188 bits (208), Expect = 1e-41 Identities = 188/244 (77%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| || || |||||||||||||| || || |||||| | ||||| || || ||| Sbjct 446 TGTACTTAGTCACAGCCTTGGTACCCTCAGACACCGCGTGCTTCGCCAGCTCCCCAGGCA 387 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| ||||| |||||||||||||| |||| | ||| || ||||||||| Sbjct 386 ACAGCAGCCGCACAGCGGTCTGGATCTCCCGGGAGGTGATGGTCGAGCGCTTGTTGTAAT 327 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||||||| ||||| | ||||||| |||| |||||||| ||||||||||||| Sbjct 326 GCGCCAGGCGGGACGCCTCCCCGGCGATGCGCTCGAAGATGTCGTTCACAAACGAGTTCA 267 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||||| || ||||||||||||||| || |||||||||| Sbjct 266 TGATGCCCATGGCCTTGGAGGAGATCCCGGTGTCGGGGTGCACCTGTTTCAGCACCTTGT 207 Query 1485710 AAAC 1485713 | || Sbjct 206 ACAC 203 >seq286588 Length=107217 Score = 120 bits (132), Expect = 5e-21 Identities = 175/245 (71%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| || ||||| ||||| || || || || || |||||| | |||| || || ||| Sbjct 13683 TGTATTTAGTGACAGCCTTTGTGCCTTCCGACACCGCGTGCTTAGCCAACTCCCCAGGCA 13742 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||||||||||||||| || | | ||| || |||||||| || | Sbjct 13743 GCAGCAGGCGCACGGCGGTCTGGATCTCTCGCGAACTGATAGTCGATCGCTTGTT-GTAC 13801 Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 |||| ||| ||||||| | | ||||| |||| | ||| | || || || ||| Sbjct 13802 AAAGCCAAGCGTGACGCCTCGGCGGCAATGCGCTCGAAGAGATCGCTCACGAAGGAATTC 13861 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||| | || || || ||| ||| || ||||||||||| ||||||||| Sbjct 13862 ATGATGCTCATAGCCTTAGAAGAAATACCCGTGTCCGGATGCACCTGCTTCAGCACCTTG 13921 Query 1485709 TAAAC 1485713 || || Sbjct 13922 TAGAC 13926 >seq284484 Length=1466883 Score = 105 bits (116), Expect = 1e-16 Identities = 177/256 (69%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| ||||| ||||| || ||||| || || || || ||||||| || || | | Sbjct 170087 TGTACTTAGTGACAGCCTTAGTGCCCTCAGACACCGCATGTTTGGCCAGCTCCCCTGGTA 170146 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| ||||| || ||||||||||| |||| ||| || ||||||||| Sbjct 170147 GAAGCAGACGCACCGCAGTCTGGATCTCACGGGAAGTGATGGTTGAGCGCTTGTTGTAAT 170206 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||| ||| ||| || | ||||| || | ||||| || ||||| ||||||| Sbjct 170207 GAGCCAAGCGAGAGGCTTCTCCTGCAATGCGTTCAAAAATGTCATTTACAAAGGAGTTCA 170266 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| || || || ||| ||||| || || || ||||| |||| Sbjct 170267 TGATGCCCATGGCCTTGGAAGAAATACCGGTGTCTGGGTGAACTTGTTTCAGCACTTTGT 170326 Query 1485710 AAACAAAGGACGAGTA 1485725 | ||| || ||||| Sbjct 170327 ACACATAGATAGAGTA 170342 Score = 91.5 bits (100), Expect = 2e-12 Identities = 169/246 (69%), Gaps = 4/246 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| ||||| || ||||| |||||||| || || || || | ||||| || || | | Sbjct 528818 TGTATTTGGTAACAGCCTTAGTACCCTCAGACACAGCATGTTTAGCCAGCTCCCCTGGTA 528759 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT--TAGT 1485587 | |||||||| || ||||||||||| |||| ||| || ||| |||| |||| Sbjct 528758 GCAGTAGGCGCACAGCAGTCTGGATCTCCCGGGAAGTGATGGTCGAGCGTTTGTTGTAGT 528699 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 |||| | | | | || || |||| || || | ||||| || ||||| ||||| Sbjct 528698 GCGCTAAACGAGAC--GCTTCACCAGCGATTCGCTCAAAGATGTCATTTACAAAGGAGTT 528641 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 |||||| ||| | ||| || || || ||| || || || ||||| ||||| || Sbjct 528640 CATGATGCCCATGGCTTTTGAAGAAATACCGGTGTCTGGATGAACTTGCTTCAGCACTTT 528581 Query 1485708 GTAAAC 1485713 ||| || Sbjct 528580 GTATAC 528575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7885757323326180