Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq284675 154 1e-32 >seq284675 Length=1105255 Score = 154 bits (170), Expect = 1e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 ||||| ||||| || || ||||||||||| || ||||| || || | | |||||| | Sbjct 341432 CGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCA 341491 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || || |||||| | ||||| || |||||||| || ||||| || |||||| Sbjct 341492 TCTTCTAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTG 341551 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | ||| |||||| | || | |||||| | |||||||| || || || Sbjct 341552 TCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCTAGCGTGATG 341611 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || |||||||| |||||||| ||||| ||||||||||| Sbjct 341612 GTCTTGCCAGTCAAGGTTTTTACAAAGATCTGCATTTT 341649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 383873559513420