Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq285313 123 2e-22 >seq285313 Length=1148134 Score = 123 bits (136), Expect = 2e-22 Identities = 361/548 (66%), Gaps = 6/548 (1%) Strand=Plus/Minus Query 281777 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 281836 |||||||| || ||||||||||||||||| | | | || || | ||| |||||||| Sbjct 650962 GCACCATAAGCCACAGCTTCATCAGGATTGATGCTCTTGTTCAGCTCTTTCCCATTGAAG 650903 Query 281837 AAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAAT 281895 |||| || |||| ||| | ||| || ||||| | |||||| ||||| | |||||| Sbjct 650902 AAATCCTGCAGGAGTT-TCTGAATCTTGGGGATACGGGTTGATCCGCCAACCAGTACAAT 650844 Query 281896 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 281955 ||||| | |||||||| || ||||| | |||| | | || || || || || || Sbjct 650843 GTCATGGATTTGTGATTTGTCTAGTTTGGCATCCCGCAGGGCCTTCTCTACAGGATCCAG 650784 Query 281956 ACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATT 282015 | | | |||| || | | | ||||| || |||||| || | | | | Sbjct 650783 AGTGCCACGGAACAGATCAGCATTTAACTCTTCAAAACGAGCTCTGGTTATTGAGGTGTA 650724 Query 282016 ATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAG 282075 | | ||||| || || | | || |||| |||||| | | ||||| ||| || || Sbjct 650723 AAAGTCAATGCCCTCATAGAGCGAGTCAATTTCAATACTGGCCTGAGTGCTAGAGGAGAG 650664 Query 282076 TGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGAT-TGAT 282134 | ||| |||||||||||||||||||| | ||| | || | || | | || | | | Sbjct 650663 AGTACGCTTAGCACGTTCACATGCTGTGCGTAGCCGGCGAACTGC-TCTCTTGTTCTCAG 650605 Query 282135 TCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAA-CACACCATGTTACAAGACGATTA 282193 | | || | || | || | |||||| || ||| | | || | || | ||| ||| Sbjct 650604 TAATGTCCTTCTTGTGCTTACGCTTGAATTCAGCAATGAAATGAT-TGACCATACGGTTA 650546 Query 282194 TCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCA 282253 ||||| || || || ||||| | |||| || | || | | |||| || | ||| Sbjct 650545 TCAAAGTCCTCCCCACCCAAGTGGGTATCACCAGCAGTTGACTTCACTTCAAAGATGCCA 650486 Query 282254 TCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACA 282313 || |||| || | | | |||||| || ||||| || | ||||| ||||| ||| Sbjct 650485 TCCTCAATAGTGAGGATTGAAACATCGAAAGTGCCACCCCCAAGGTCAAAGATAAGGACA 650426 Query 282314 TTCATTTC 282321 ||| |||| Sbjct 650425 TTCCTTTC 650418 Score = 91.5 bits (100), Expect = 1e-12 Identities = 102/135 (76%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 282339 CAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGAC 282398 |||| || || |||| |||||||||||| |||||||| || || || | |||||||||| Sbjct 650304 CAAG-CCGTAAGCAATAGCAGCAGCAGTCGGTTCATTGATGATCCTGAGCACATTAAGAC 650246 Query 282399 CAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAA 282458 | ||||| |||| |||||||| ||||| || | || || || || || || || || | Sbjct 650245 CCGCAATGGTTCCAGCATCTTTTGTGGCCTGGCGCTGAGAGTCATTGAAGTAGGCTGGTA 650186 Query 282459 CAGTAATAACGGCAT 282473 | || | || |||| Sbjct 650185 CTGTGACCACTGCAT 650171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3726558569256120