Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq284675 174 3e-38 seq283819 109 1e-18 >seq284675 Length=1105255 Score = 174 bits (192), Expect = 3e-38 Identities = 168/216 (78%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| || ||||||||||| ||||||||||| || || || || || || | | || Sbjct 341432 CGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCA 341491 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 |||||||| || || ||||||||||| | || || ||||||||||| || ||||| || Sbjct 341492 TCTTCTAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTG 341551 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || || || || || ||||| ||||| || ||| | || |||||||| | || || Sbjct 341552 TCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCTAGCGTGATG 341611 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||||||| ||||| || |||||||| ||||||||| Sbjct 341612 GTCTTGCCAGTCAAGGTTTTTACAAAGATCTGCATT 341647 >seq283819 Length=3435520 Score = 109 bits (120), Expect = 1e-18 Identities = 128/173 (74%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 60139 GATAGCCAGAGCATTATGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGT 60198 |||||| | || ||||||||||||| | || ||||| || || ||| | || || | Sbjct 361503 GATAGCTGGTGCTTTATGGTGGTACTTCCTCTCAAAAGGAATTGAGTACCTGGACACAAT 361562 Query 60199 GTTTTTCATACTTAGGAAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTT 60258 |||||||| || ||||| || ||||| || | ||||| | ||||| ||||| ||||| Sbjct 361563 ATTTTTCATCCTGAGGAAGAAATTTAACCAAATCAGTTTCCTTCACGTCTATCACCATTT 361622 Query 60259 TACTATGTTTACTTTAGGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCAAG 60311 |||||||| ||||| | ||| | || || || ||| || | ||||| |||| Sbjct 361623 CACTATGTTCACTTTGTGGTGGATTGGTATCAAGTGGGTTCCAGGAGGACAAG 361675 Score = 84.2 bits (92), Expect = 4e-11 Identities = 116/164 (71%), Gaps = 9/164 (5%) Strand=Plus/Plus Query 60443 CAATTCCATATAGCTATAGGACATACCGCTATGTCCATTTACATAGATTGTCCGTTTCCA 60502 || |||||| | || | || || || || ||||| ||||| || || ||||| || || Sbjct 1909093 CAGTTCCATGTGACTCTGGGCCACACAGCCATGTCTATTTATATCGACTGTCCCTTCCCT 1909152 Query 60503 AAATGGACACAATGGTCAGTTATCATTTATTCTATTACTTTTATATTACTGTTTGGTAAC 60562 ||||||| || ||| || || || ||| |||| || ||||| || |||| |||||| Sbjct 1909153 AAATGGATGCACTGGGGTGTAATGATCTATGCTATCACCTTTATTTTCTTGTTCGGTAAC 1909212 Query 60563 TTCTATTTTAGAACATA---------CAAGAAATCCAGTAAGAA 60597 ||||| | | | ||||| |||| |||||| |||||| Sbjct 1909213 TTCTACTATCGGACATATAAAATGCCCAAGGAATCCATTAAGAA 1909256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 978221617564180