Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq284884 205 1e-47 seq285407 159 4e-34 seq286078 96.9 4e-15 >seq284884 Length=8161990 Score = 205 bits (226), Expect = 1e-47 Identities = 615/938 (66%), Gaps = 15/938 (2%) Strand=Plus/Plus Query 162120 ATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGA 162179 ||| || ||||| || || | ||| || |||| || ||||| || | || ||| Sbjct 7516486 ATCAAATTTGTTAGCAAATAAGTGGTGT---TTCTGTAACATCCAGTTCAAGTCTCCCAC 7516542 Query 162180 TCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATC 162239 ||| || || ||||| || ||||| || | || |||| || ||||| |||| || | Sbjct 7516543 TCCAAATACACACACAGAACGCACATGAATTCCATTGCATGGAGGATAGGGGGCACCTTT 7516602 Query 162240 GTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGA 162299 |||||||||||| | || |||||||| || ||||| | | ||| | |||||| || Sbjct 7516603 TGACACATCCCCCTCAAAATAATGCCACTTCACAAACCTTGCAAGAGCATTCATGTCAGA 7516662 Query 162300 GGTGTCGTACTTGTACACT-GACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358 | || ||||||| |||| || | || || || ||||| | || | ||| || | || Sbjct 7516663 AATATCATACTTGT-CACTGGAAGAAACTGCCCCTGGAACTTCAGGGATTCTTTGAATAG 7516721 Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418 ||||||||| || ||| || || ||||| || || || | ||| || || ||||| || Sbjct 7516722 TAGCCCACAAGTATTCATCGGGGCTATATGTATCTTTAGCCCATTCAATAAACTCAAGGA 7516781 Query 162419 CCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTAC 162478 | | | | ||| | || || | ||| | ||| ||| || || || | Sbjct 7516782 TTTTGCTGTTTTCTAGCACATACTCTACAAATCTCCTACTAGCAACAAAATAGGCACTGC 7516841 Query 162479 CAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCA 162538 |||| || || || | | | ||| || || | ||||||| ||| |||| || Sbjct 7516842 CAGAGAAAACAGGAGTACTGAGAGGTGGAGGTTGTTTGTCTATTCCCATGTTCTTTAATT 7516901 Query 162539 TTCCCTCTACGACCACGT-GTCTCTTCCTCCACCTGGCCATC-TTACTGGTAGACGGGTG 162596 | || || |||| | | || | || |||| | | || || |||| || | | Sbjct 7516902 TACCATCAACGATTTCATAGTGT-TTTTTCCATC-GTATTTCTTTGCTGGAAGGCATTTT 7516959 Query 162597 TTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATT 162656 || || |||| ||||| |||| ||||| |||| | ||| || || | || Sbjct 7516960 CTCAGTTTCTAAGCTGTTTTCACCCTTTAAGGCTTTCAATTTCTCCACTATTTCCTGGTT 7517019 Query 162657 GGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAG 162716 |||||||| |||||||| | || || | ||| || | ||||||||| || || Sbjct 7517020 GGTCTTAATAGGAAAGTCCATACCACATAAATTTATCAAATATTTCCAGTTTGTACTTCT 7517079 Query 162717 TCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACAC 162776 || ||| ||||| | | ||||| || || ||||| || | ||||| || || ||||| Sbjct 7517080 TCTGTAGAGATCTTTCATGCAGTTGAGGTCAGCCTGTACCCTGCTCCATGAAGCATACAC 7517139 Query 162777 GACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCAC 162836 || || ||||| |||| | ||||||||| | |||||| || || || ||| | || Sbjct 7517140 TACACTTTCCAATTGGCTGGCAATAAAGACATTATTGAAACAGGACACAATTCCCTTAAC 7517199 Query 162837 GGCCAGTGAGAACA---TCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTG 162893 | ||| |||| | || || | || | || || || | |||||| |||||| Sbjct 7517200 TG-CAGCCAGAAAAGATTCTGG--AGACTTTTTGTCAACATGAATGCAGTAATAATTCTG 7517256 Query 162894 AGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGAT 162953 ||| || ||||| | || || | ||| || | ||| ||||| || || | || || || Sbjct 7517257 AGGTGCATAGATTGATCTTAGAAGTCTATCAAGCATGTCTATTTTGTGATATATGACTAT 7517316 Query 162954 AGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAGACCCTGTAAAGTACTTGCG 163013 ||||| || || || || ||||| || || |||||||| | |||| ||||| || Sbjct 7517317 TGAATAGGCAATTGGAAATTCAGCTTCTTCTTTACTGAGAGGTTCCGTAATATACTTCCG 7517376 Query 163014 GTCCCTCACAAACGCCGCACAGTCCTCCGTCATGTTAA 163051 | ||| | ||||| ||| |||||| |||| Sbjct 7517377 CATTTTGGTAAAAGAGGCACAATCCATCGTCATATTAA 7517414 >seq285407 Length=7617620 Score = 159 bits (176), Expect = 4e-34 Identities = 382/566 (67%), Gaps = 15/566 (3%) Strand=Plus/Minus Query 176975 CACGTGAATGAAAGCGTCTCCCGGGACGTAATTTTCGTAATTCTCTCTCGATGTTCCGAG 177034 ||| |||||||||| ||| | || | ||||| || || || ||||| |||| || | Sbjct 5896450 CACATGAATGAAAGAATCTGCTGGAATATAATTCTCATAGTTTTCTCTGGATGGGCCCAA 5896391 Query 177035 TACTATGGGTACCGCACCTGCCATAAGAGATCGGTAGAGTTTTTCGGTAATATAGTCCCT 177094 ||| | ||||| | || |||| || || ||| |||||||| |||||||| || | Sbjct 5896390 TACAACTGGTACAGATCCAGCCAAAAAAGCATTGTAAAGTTTTTCAGTAATATAATCTTT 5896331 Query 177095 GTGTACGGAGTTCTCAAACGCGAGATAGAATTTACAGGAAGATAGTAGCGGGA-TGAAGT 177153 ||| | ||||| ||||| | || || |||||||| | ||| | ||| ||| | |||| Sbjct 5896330 GTGAATTGAGTTTTCAAAGGACAGGTAAAATTTACAAGTAGAGA-TAGTTGGAATCAAGT 5896272 Query 177154 CATCATCGGGTATATAATCTCCTACTACGTTCCCGTATACATGTATATCTATGTGTTTAC 177213 | ||| | ||| ||||| | | | | ||| || ||| || || | | ||| | Sbjct 5896271 TTTTATCATTCACATAGTCTCCAAATGCTTGCCCATAGGTATGGATTTCAGTATATTTGC 5896212 Query 177214 TGAGCTCTAGGTAGTATCTCGA-TCTCACGTGGTCGTTGTTCCAATTGCTGACGACCCAG 177272 | ||||| ||||| || || || | || ||| |||||| || || |||||||| Sbjct 5896211 TTAGCTCGTTATAGTA-CTTGACTCGAGCATGCTCGGGGTTCCAGTTACTTACGACCCAA 5896153 Query 177273 CAAACTAACTTGCTCTTTGCGGGAACGGGA-TTCGATACTAATGCAGTGTCTCTGAGCGT 177331 || ||||| || |||||||| ||| | ||| | ||| | | | | | | | Sbjct 5896152 CACACTAATTT-CTCTTTGCT----CGGCACTTCAAAGGTAAAGGGGCTTGTGCTAACCT 5896098 Query 177332 TAGTGAT-CCATAGGGCACGTGAATATCCGAGTCGCGTCTGTACGTTAACGTGAGATTGA 177390 | ||| ||||| ||||| |||||||| || || || | || || | || || |||| Sbjct 5896097 TCATGAAGCCATAAGGCACTTGAATATCTGAATCACGCCGATAAGTCAGGGTCAGGTTGA 5896038 Query 177391 AAAGGTTTTCTATACC--TTGTTTGAAGGGGCTGTTACTGGGCGATTCTAAGTTCATCCA 177448 | |||| ||| || || || |||| | | ||| | | || || || ||||||||||| Sbjct 5896037 ACAGGTGTTCAATGCCACTTTTTTGTGGAG--TGTGAGTTGGAGACTCCAAGTTCATCCA 5895980 Query 177449 TATCCACTTTTGAAAGGTTGGTCTGGGTTCCGTAGGTAGAGTATAAGGATCTATACTTAT 177508 |||||||| ||||| | || || | || | ||||| | || |||| || || Sbjct 5895979 AATCCACTTCTGAAATGGCGGCCTAGCTTGCTGAGGTAAATTAGTGAGATCCCAGCTGAT 5895920 Query 177509 CTCTCTGTGGTGAAAGACTACGGCAT 177534 ||||||||||||| | ||||||| Sbjct 5895919 GTCTCTGTGGTGAATAAGGACGGCAT 5895894 >seq286078 Length=3490189 Score = 96.9 bits (106), Expect = 4e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 162868 TCTACGTGTACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAAC 162927 || ||||| |||||||| | ||||| || |||||||||| || ||| | ||||||||| Sbjct 2759519 TCCACGTGGACGCAGTAGATGTTCTGGGGCGCGTAGATGGACCGCAGCAGCCTCTCGAAC 2759578 Query 162928 ATCTCTATCTTATGGTGTACCACGATAGAATACGCTATGGGGAACTCAGCCTCCTC 162983 ||||| ||||| | ||| ||||| || || || || || ||||| || ||||||| Sbjct 2759579 ATCTCGATCTTCTCGTGCACCACCATGGAGTAGGCGATCGGGAAATCCTCCTCCTC 2759634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576359622752000