Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq283102 170 3e-36 seq213526 152 7e-31 seq286588 98.7 1e-14 seq284484 86.0 9e-11 >seq283102 Length=42139 Score = 170 bits (188), Expect = 3e-36 Identities = 176/229 (77%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| || |||||||||||| |||| || |||||||| | ||||| Sbjct 31168 TACAAGGTGCTGAAACAGGTGCACCCCGACACCG---GGATCTCCTCCAA---GGCCATG 31221 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||||||||| |||||||| |||| ||||||| | ||||| || Sbjct 31222 GGCATCATGAACTCGTTTGTGAACGACATCTTCGAGCGCATCGCCGGGGAGGCGTCCCGT 31281 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| | |||||||||| || ||| | | || |||||||||||||| |||||| Sbjct 31282 CTGGCGCATTACAACAAGCGCTCGACCATCACCTCCCGGGAGATCCAGACCGCTGTGCGC 31341 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| || || ||||||| |||||||||||| |||||||||| Sbjct 31342 CTGCTGCTGCCTGGGGAGCTGGCCAAGCACGCCGTCTCTGAGGGCACCA 31390 Score = 150 bits (166), Expect = 3e-30 Identities = 171/227 (75%), Gaps = 7/227 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| || |||||||||||| |||| || |||||||| | ||||| Sbjct 16220 TACAAGGTGCTGAAACAGGTGCACCCCGACACCG---GGATCTCCTCCAA---GGCCATG 16273 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||||||||| |||||||| |||| ||||||| | ||||| ||| Sbjct 16274 GGCATCATGAACTCGTTTGTGAACGACATCTTCGAGCGCATCGCCGGGGAGGCGTCCCGC 16333 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| | |||||||||| || ||| | | || |||||||||||||| ||||| Sbjct 16334 CTGGCGCATTACAACAAGCGCTCGACCATCACCTCCCGGGAGATCCAGACCGCTGTGCG- 16392 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||| | ||| || || ||||||| |||||| || || ||||| || Sbjct 16393 CTGCTGCTGCCTGGGGAGCTGGCCAAGCACGCTGTGTCTGAGGGTAC 16439 >seq213526 Length=744 Score = 152 bits (168), Expect = 7e-31 Identities = 172/229 (75%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| || |||||||||||| |||| || |||||||| | ||||| Sbjct 206 TACAAGGTGCTGAAACAGGTGCACCCCGACACCG---GGATCTCCTCCAA---GGCCATG 259 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||||||||| |||||||| |||| ||||||| | ||||| ||| Sbjct 260 GGCATCATGAACTCGTTTGTGAACGACATCTTCGAGCGCATCGCCGGGGAGGCGTCCCGC 319 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| | |||||||||| || ||| | | || |||||||||||||| ||||| Sbjct 320 CTGGCGCATTACAACAAGCGCTCGACCATCACCTCCCGGGAGATCCAGACCGCTGTGCGG 379 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| || || ||||| | |||||| || || ||||| |||| Sbjct 380 CTGCTGTTGCCTGGGGAGCTGGCGAAGCACGCGGTGTCTGAGGGTACCA 428 >seq286588 Length=107217 Score = 98.7 bits (108), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||||||||| ||||||||||| || || ||| | || | | || | | Sbjct 13925 TCTACAAGGTGCTGAAGCAGGTGCATCCGGACAC----GGGTATTTCTTCTA--AGGCTA 13872 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || |||||||| || || || | ||| | |||| ||||| | | ||||||| | Sbjct 13871 TGAGCATCATGAATTCCTTCGTGAGCGATCTCTTCGAGCGCATTGCCGCCGAGGCGTCAC 13812 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 || |||| | ||||||||| || ||| | |||| ||||||||||||||||||| Sbjct 13811 GCTTGGCTTTGTACAACAAGCGATCGACTATCAGTTCGCGAGAGATCCAGACCGCCGTGC 13752 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||||| | ||| || || |||| | |||||| || || || ||||| Sbjct 13751 GCCTGCTGCTGCCTGGGGAGTTGGCTAAGCACGCGGTGTCGGAAGGCAC 13703 >seq284484 Length=1466883 Score = 86.0 bits (94), Expect = 9e-11 Identities = 125/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 724964 CAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGA 725023 |||| ||||| ||||||||||| ||||| || ||||| | || ||||| | || Sbjct 170283 CAAGGCCATGGGCATCATGAACTCCTTTGTAAATGACATTTTTGAACGCATTGCAGGAGA 170224 Query 725024 GGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGAC 725083 ||| |||| |||| | | |||||||||| || ||| | || ||||||||||| Sbjct 170223 AGCCTCTCGCTTGGCTCATTACAACAAGCGCTCAACCATCACTTCCCGTGAGATCCAGAC 170164 Query 725084 CGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || ||||| ||| | | | || || ||||||| || || || || |||||||| Sbjct 170163 TGCGGTGCGTCTGCTTCTACCAGGGGAGCTGGCCAAACATGCGGTGTCTGAGGGCAC 170107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7150166174192440