Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq284675 111 2e-19 >seq284675 Length=1105255 Score = 111 bits (122), Expect = 2e-19 Identities = 165/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| |||| || | ||| || |||||||| || || ||||||||||| Sbjct 341420 CCACCCCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGAC 341479 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| || || ||||| ||||| | ||||||||| || || Sbjct 341480 AGGGTGCGCCCATCTTCTAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGA 341539 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||||||||| || || ||||| ||||| || | ||||| | || || Sbjct 341540 ATGCCTTCTTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACT 341599 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTTT 134720 || || || ||||| || || || || ||||| || || || |||||||| ||| Sbjct 341600 TCTAGCGTGATGGTCTTGCCAGTCAAGGTTTTTACAAAGATCTGCATTTTCTTT 341653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 503587683882400