Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq283893 131 1e-25 seq283574 104 2e-17 seq284051 100 2e-16 >seq283893 Length=4807905 Score = 131 bits (144), Expect = 1e-25 Identities = 122/155 (79%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 41049 ATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCA 41108 ||||| ||||| || || || | || |||||||| ||| |||||||||||||| Sbjct 4300568 ATGGCTTTGCCTCCATGCCACGCCCTTTGCCAGTTTTATGTTCTAAATGGTGAACTGTCT 4300509 Query 41109 TGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGT 41168 || || |||||||| ||||| || ||||||||||||||||| || || || || || ||| Sbjct 4300508 TGCCAGTTGTATCAGAGATCTGGAGACATGGGACTAGGGGTGCCTTTCAATATCGCCAGT 4300449 Query 41169 TATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 ||| | |||||||| ||||||||||| || || || Sbjct 4300448 TATTCACTGCTCACATATATGATTGCCCATGTCAC 4300414 >seq283574 Length=3212210 Score = 104 bits (114), Expect = 2e-17 Identities = 108/141 (77%), Gaps = 3/141 (2%) Strand=Plus/Plus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 ||||||| |||||||| ||||| |||||||| ||||||| ||||||||||| ||||| | Sbjct 2996904 AAAACCCTTTTGATTTCATGGAGAATATTTCCCTGGAAGGAAAAACAAACTTCTTTGAGA 2996963 Query 44553 AACGCGTTGGAGAATATCAGCGAATGGGCGTCATG---ATAACAAGTGACAATAAATTTA 44609 | || ||| ||| |||||||| | | || ||| ||||| |||||| || | Sbjct 2996964 AGCGGGTTTCAGAGTATCAGCGCTTTGCAGTTATGGCAGAAACAACGGACAATGTTTTCA 2997023 Query 44610 CTACGGATGAAGATTTCTAAT 44630 || ||||| ||||||||||| Sbjct 2997024 CTCTGGATGCAGATTTCTAAT 2997044 Score = 96.9 bits (106), Expect = 3e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 || ||||| ||| | |||||||| || ||||| ||||| ||||| ||| || || ||| Sbjct 1553894 CAGGAAGTGCAAATCCCAGAAGCTCGCTGTTTCTATGGCTTTCAGATTTTAATTGAGAAT 1553953 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 |||| || || ||||||||| | |||||||| || |||||||||||| Sbjct 1553954 GTTCACTCAGAGATGTACAGTTTGCTGATAGACACTTACATCAAAGAT 1554001 >seq284051 Length=2145588 Score = 100 bits (110), Expect = 2e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 |||||||| || || | ||||| || | ||| ||||| || || ||||| || |||||| Sbjct 1500551 CAAGAAGTACAGATAACTGAAGCTCGCTTTTTCTATGGCTTCCAGATTGCTATGGAAAAT 1500492 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| |||||||||||||| || ||||| || ||||| |||||| Sbjct 1500491 ATACATTCAGAAATGTACAGTCTGCTCATAGACACTTACATTAAAGAT 1500444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396067614153100