Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq285313 192 2e-43 seq284675 152 2e-31 seq283112 111 5e-19 seq284295 93.3 1e-13 seq283197 89.7 2e-12 seq285083 87.8 5e-12 seq283960 87.8 5e-12 seq285568 86.0 2e-11 >seq285313 Length=1148134 Score = 192 bits (212), Expect = 2e-43 Identities = 374/547 (68%), Gaps = 4/547 (1%) Strand=Plus/Plus Query 349760 GaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACA 349819 |||| ||| | ||||| ||||| | || ||||| ||||| ||||| ||| | || || Sbjct 650418 GAAAGGAATGTCCTTATCTTTGACCTTGGGGGTGGCACTTTCGATGTTTCAATCCTCACT 650477 Query 349820 CTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAA 349879 |||| || || || |||||||| || |||||||||||||||| || | ||||| || Sbjct 650478 ATTGAGGATGGCATCTTTGAAGTGAAGTCAACTGCTGGTGATACCCACTTGGGTGGGGAG 650537 Query 349880 GATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGC-TAAAAT 349938 || |||||||| ||| | || ||||| || ||||| |||||| |||| || | Sbjct 650538 GACTTTGATAACCGTATGGTCAATCATTTCATTGCTGAATTCAAGCGT-AAGCACAAGAA 650596 Query 349939 TGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAA 349998 || ||| || || |||||| | || || ||| | || || |||||||||||||| Sbjct 650597 GGACATTACTGAGAACAAGAGAGCAGTTCGCCGGCTACGCACAGCATGTGAACGTGCTAA 650656 Query 349999 GCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAA 350058 |||| | | || |||| || || || |||||||||||| || || ||| |||| Sbjct 650657 GCGTACTCTCTCCTCTAGCACTCAGGCCAGTATTGAAATTGACTCGCTCTATGAGGGCAT 650716 Query 350059 AGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGAATTATGTATGGATCTTTTTAG 350118 || || | | || || || | ||||| |||||||| ||| | ||||| || | Sbjct 650717 TGACTTTTACACCTCAATAACCAGAGCTCGTTTTGAAGAGTTAAATGCTGATCTGTTCCG 650776 Query 350119 AGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGAT 350178 | || |||||||||| || || | | ||||| ||| | |||| || || Sbjct 650777 TGGCACTCTGGATCCTGTAGAGAAGGCCCTGCGGGATGCCAAACTAGACAAATCACAAAT 650836 Query 350179 TGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATC 350238 |||| | || | ||||| || || || ||||| || || |||| | | || Sbjct 650837 CCATGACATTGTACTGGTTGGCGGATCAACCCGTATCCCCAAGATTCAGAAACTCCTGCA 650896 Query 350239 TGAGTTTTTTAATGGCAAAGAAC-CTTCTAGATCAATTAATCCAGATGAAGCTGTTGCAT 350297 || || || ||||| ||||| | | ||| | || ||||| ||||||||||| || | Sbjct 650897 GGATTTCTTCAATGGGAAAGAGCTGAACAAGAGC-ATCAATCCTGATGAAGCTGTGGCTT 650955 Query 350298 ATGGTGC 350304 ||||||| Sbjct 650956 ATGGTGC 650962 Score = 163 bits (180), Expect = 9e-35 Identities = 360/532 (68%), Gaps = 6/532 (1%) Strand=Plus/Minus Query 183262 CTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGAGATAAT-TCTTTGCCATTA 183320 |||||||||| || ||||||||||| || || || | | | | | ||||| ||||| Sbjct 650964 CTGCACCATAAGCCACAGCTTCATCAGGATTGAT-GCTCTTGTTCAGCTCTTTCCCATTG 650906 Query 183321 AA-AAATTCTGAAAGCATTTGTTGAATTTTTGGAATTCTAGTTGAACCACCGACTAATAC 183379 || |||| ||| | | ||| | |||| || || || | ||||| || || || | ||| Sbjct 650905 AAGAAATCCTGCAGGAGTTTCT-GAATCTTGGGGATACGGGTTGATCCGCCAACCAGTAC 650847 Query 183380 TACTTCATCGATAT-TACTTTTACTAATTTGTGAATCTTTTAAAACTTTTTCAACAGGGT 183438 | |||| ||| | | ||| ||| |||| | ||| | | || || ||||| | Sbjct 650846 AATGTCATGGATTTGTGATTTGTCTAGTTTG-GCATCCCGCAGGGCCTTCTCTACAGGAT 650788 Query 183439 CCATAGTTTTTCTAAATAAATCTATACATAACTCTTCTAATCTTGCTCTAGTTAAAGATG 183498 ||| ||| | || | ||| | ||||||||| || | ||||| |||| || | Sbjct 650787 CCAGAGTGCCACGGAACAGATCAGCATTTAACTCTTCAAAACGAGCTCTGGTTATTGAGG 650728 Query 183499 aaaaaaaGTCAATACCATTATATAAGGAATCAATTTCAATCGATGTTTGTGTAGATGATG 183558 |||||||||| || | ||| | || ||||||||||| | || || || | Sbjct 650727 TGTAAAAGTCAATGCCCTCATAGAGCGAGTCAATTTCAATACTGGCCTGAGTGCTAGAGG 650668 Query 183559 ATAATGTTCTTTTAGCTCGTTCACATGCTGTTCTTAGTCGACGTAATGATCTTGGATTAT 183618 | | || | ||||| |||||||||||||| | ||| || || | || ||| || | Sbjct 650667 AGAGAGTACGCTTAGCACGTTCACATGCTGTGCGTAGCCGGCGAACTGCTCTCTTGTTCT 650608 Query 183619 CTGTAATATCTTGTTTATGTTTTCTTTTAAATTCAGTAATAAAATGTTGAAGTAATCTTG 183678 | ||||| || | || || || | || ||||||| ||| ||||| | | | | Sbjct 650607 CAGTAATGTCCTTCTTGTGCTTACGCTTGAATTCAGCAATGAAATGATTGACCATACGGT 650548 Query 183679 TATCAAAATCTTCACCACCTAAATGTGTATCGCCAGCAGTAGCTTTAACTTCAAATATTC 183738 ||||||| || || ||||| || || ||||| |||||||| | || |||||||| || | Sbjct 650547 TATCAAAGTCCTCCCCACCCAAGTGGGTATCACCAGCAGTTGACTTCACTTCAAAGATGC 650488 Query 183739 CGTCTTCAATATTTAAAATTGATACATCAAATGTACCACCACCCAAATCAAA 183790 | || |||||| | | ||||| ||||| || || ||||| || | ||||| Sbjct 650487 CATCCTCAATAGTGAGGATTGAAACATCGAAAGTGCCACCCCCAAGGTCAAA 650436 Score = 105 bits (116), Expect = 2e-17 Identities = 111/145 (77%), Gaps = 1/145 (1%) Strand=Plus/Plus Query 349598 ACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCA 349657 || || ||| |||| || | || ||||||||||| || ||||| | ||||| || Sbjct 650161 ACTGTTACTAATGCAGTGGTCACAGTACCAGCCTACTTCAATGACTCTCAGCGCCAGGCC 650220 Query 349658 ACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACT 349717 |||||||||||||| | ||||||||| | ||||| || || || || |||||||| ||| Sbjct 650221 ACAAAAGATGCTGGAACCATTGCGGGTCTTAATGTGCTCAGGATCATCAATGAACCGACT 650280 Query 349718 GCTGCAGCAATTGCATATGGGCTTG 349742 ||||| || ||||| || |||||| Sbjct 650281 GCTGCTGCTATTGCTTA-CGGCTTG 650304 >seq284675 Length=1105255 Score = 152 bits (168), Expect = 2e-31 Identities = 173/232 (75%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| || | | || || | || ||||| || ||||| || || || || || Sbjct 341416 CATACCACCCCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTC 341475 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || ||||||||||| || || || ||||||||||| | | |||||||| || Sbjct 341476 TGACAGGGTGCGCCCATCTTCTAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGG 341535 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| |||||||| ||||| ||||| || || ||||| ||||| | ||| || || Sbjct 341536 AGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTC 341595 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 ||||| || || | ||||| || || | ||||||||||| ||||||||| Sbjct 341596 TACTTCTAGCGTGATGGTCTTGCCAGTCAAGGTTTTTACAAAGATCTGCATT 341647 >seq283112 Length=259727 Score = 111 bits (122), Expect = 5e-19 Identities = 153/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 350107 GGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTC 350166 |||||| || | | || ||| | |||||| | ||||| || ||||| | | || Sbjct 219960 GGATCTGTTCCGTTCCACCATGAAGCCTGTGCAGAAAGTTCTAGAAGATTCTGACCTGA- 220018 Query 350167 CAAAAATCAGA--TTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTT 350224 | |||||||| ||||||| | || | || ||||| ||||| || || || || | Sbjct 220019 -AGAAATCAGACATTGATGAGATTGTACTTGTGGGTGGCTCTACTCGAATCCCCAAGATA 220077 Query 350225 CAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAATTAATCCAGAT 350284 |||||| | | ||||| || ||||||||||| |||||| | || ||||||||| Sbjct 220078 CAACAGCTTGTTAAAGAGTTCTTCAATGGCAAAGAGCCTTCTCGTGGCATCAATCCAGAT 220137 Query 350285 GAAGCTGTTGCATATGGTGCTGCTGTTCAGGC 350316 || ||||| || |||||||||||||||||||| Sbjct 220138 GAGGCTGTAGCTTATGGTGCTGCTGTTCAGGC 220169 Score = 96.9 bits (106), Expect = 1e-14 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 183250 CAGCTTGAACAGCTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGAGATAATT 183309 |||| |||||||| |||||||| || ||||| |||||||| || || |||||| | Sbjct 220171 CAGCCTGAACAGCAGCACCATAAGCTACAGCCTCATCTGGATTGATGCCACGAGAAGGCT 220112 Query 183310 CTTTGCCATTAAAAAATTCTGAAAGCATTTGTTGAATTTTTGGAATTCTAGTTGAACCAC 183369 |||||||||| || || ||| || | ||||| || || || |||| ||| || |||| Sbjct 220111 CTTTGCCATTGAAGAACTCTTTAACAAGCTGTTGTATCTTGGGGATTCGAGTAGAGCCAC 220052 Query 183370 CGACTAATACTACTTCATCGATATTACTTTTACTAATTTGTGAATCTTTTAAAACTTTTT 183429 | || | ||| | ||||| || | ||| | | | ||||||| || |||||| | Sbjct 220051 CCACAAGTACAATCTCATCAATGTCTGATTTCTTCAGGTCAGAATCTTCTAGAACTTTCT 219992 Query 183430 CAACAGGGTCCATAGT 183445 ||||| | ||| || Sbjct 219991 GCACAGGCTTCATGGT 219976 >seq284295 Length=1021263 Score = 93.3 bits (102), Expect = 1e-13 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 130661 CATACCATAGAACACTTTATAATTTTCACCATTTTCTTCAACAACTTCCCCAGCACATTC 130720 ||| |||||||||| ||| || | ||||||| ||| | || || |||||||||| Sbjct 9154 CATCCCATAGAACAGTTTCACCTTCTTGCCATTTTTTTCTAGAATCTCACCAGCACATTG 9213 Query 130721 ATCATGTGCAGCTAACATTCCTCCAAGCATAACAAAATCAGCTCCTGCTCC 130771 ||| || | || ||||||||||||||||| ||||||||||| || ||||| Sbjct 9214 ATCGTGGCCTGCAAACATTCCTCCAAGCATGACAAAATCAGCACCAGCTCC 9264 >seq283197 Length=249046 Score = 89.7 bits (98), Expect = 2e-12 Identities = 240/366 (66%), Gaps = 1/366 (0%) Strand=Plus/Plus Query 349526 TTTTTACCC-GAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGC 349584 ||| ||||| || || || || | ||| | ||| | | ||||||| || ||||||| Sbjct 180713 TTTCTACCCAGAGGAGATCTCTGCCATGATACTAGGTCATTTGAAGGAGATGGCTGAAGA 180772 Query 349585 ATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGC 349644 ||| | || | | | ||| ||||||| |||| || |||||| |||| ||||| | Sbjct 180773 CTATGTGGGCCACCCCATCACTCATGCTGTCGTTACCGTGCCAGCCCATTTCAATGACTC 180832 Query 349645 CCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGAT 349704 ||||||| || || ||||||||||| || || || | | ||| || || || | Sbjct 180833 CCAGCGTCAGGCCACCAAAGATGCTGGGGTGATCGCTGGCCTCAGTGTACTGAGGATCCT 180892 Query 349705 TAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaa 349764 || |||| | || ||||| || | || || | || || || || | |||| Sbjct 180893 TAGTGAAACTACAGCTGCCGCCCTGGCTTACTGCCTAGAGAACCCTAGCAATGGAGAACG 180952 Query 349765 aaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGA 349824 || | || || ||||| | ||||| || || || | || || | || || || | Sbjct 180953 CAACGTGCTGATCTTTGACCTGGGTGGAGGAACCTTCAACGTCTCCATCCTCACCATTAA 181012 Query 349825 AGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTT 349884 | || || | || || || || || |||| || || ||||| || || || ||||| Sbjct 181013 TGGAGGTATCCTCGAGGTGAAGGCCACCACTGGGGACACCCATCTGGGAGGGGACGATTT 181072 Query 349885 TGATAA 349890 ||| || Sbjct 181073 TGACAA 181078 >seq285083 Length=8456797 Score = 87.8 bits (96), Expect = 5e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || |||||||| || || ||||| ||||| ||||| || || |||| || || |||||| Sbjct 2095698 AGCACAAGATGGAGGGTGGACTCCTTTTGGATATTGTAGTCGGATAGGGTGCGGCCATCT 2095757 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAA 140631 || || || || ||||||||||| || | ||||| ||||| |||| Sbjct 2095758 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAA 2095803 >seq283960 Length=8219379 Score = 87.8 bits (96), Expect = 5e-12 Identities = 80/100 (80%), Gaps = 1/100 (1%) Strand=Plus/Minus Query 140537 AAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTT 140596 |||| || || | ||||||||||| || ||||| | || || |||||||| | ||||| Sbjct 1376977 AAGA-TACACACCTTTTGAATATTGTAGTCAGACAGCGTCCGTCCATCTTCCAACTGTTT 1376919 Query 140597 TCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCT 140636 |||||||| || || | ||| |||||||||||||||||| Sbjct 1376918 GCCAGCAAAAATAAGTCTTTGTTGATCAGGAGGAATTCCT 1376879 >seq285568 Length=2976841 Score = 86.0 bits (94), Expect = 2e-11 Identities = 101/134 (75%), Gaps = 6/134 (4%) Strand=Plus/Plus Query 378232 ATATAACCAGTTTGACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATT 378291 ||||| ||||||| | ||||| ||||| ||||||| || ||| | |||||| ||||| Sbjct 2743696 ATATATCCAGTTTCAGCTGTTTTTACTGCTGTATCAACTAGACCTTCTCGACCAGCCATT 2743755 Query 378292 GCATGGAAGAATAATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCT---CAATAAAT 378348 | ||||||||| || ||||||||||| | ||| |||| | |||| | ||| ||| Sbjct 2743756 GTATGGAAGAAGAACTCAGTAGGAGTCAAGCCA-GAATAGA--AACTATTGGCAACAAAA 2743812 Query 378349 CCTCTTGCGCCTGG 378362 ||| |||| |||| Sbjct 2743813 CCTTTTGCTGCTGG 2743826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509689902855860