Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq283574 87.8 2e-12 seq209978 84.2 2e-11 >seq283574 Length=3212210 Score = 87.8 bits (96), Expect = 2e-12 Identities = 94/122 (77%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 59991 GCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCT 60049 || ||||| ||| |||||||||||||||||||| || || || |||||| || ||||| Sbjct 1560410 GCCTTTGC-TGCAGTGGAAGGAATCTTCTTCTCGGGTTCTTTTGCTGCTATATTTTGGCT 1560468 Query 60050 CAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGA 60109 || ||| | || || ||||| || |||| |||||||| ||||| ||| | | || || Sbjct 1560469 GAAGAAGAGGGGTCTTATGCCTGGACTGACATTCTCCAATGAGCTCATTAGCAGAGATGA 1560528 Query 60110 GG 60111 || Sbjct 1560529 GG 1560530 >seq209978 Length=1003 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 79105 ATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCG 79164 ||||||||||||| || |||||||||| || | ||||| ||||||||||||| Sbjct 467 ATTTCTGTGCACAGGTTGCTGCACTTGATGGTTCCCAGGTTCTGCTGGTTGCTCTTCCTA 526 Query 79165 TTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTC 79205 ||||| | ||||||||| ||||||| || || || ||||| Sbjct 527 TTACAAGAGTCCTTGTACAACATGTAAGGGGTTCCTGTCTC 567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546559572772800