Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq284341 100 3e-16 seq282667 100 3e-16 seq283574 86.0 7e-12 >seq284341 Length=7331142 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 || ||||| ||||||| ||| |||||||||||||||||| || | ||||| || || Sbjct 3159577 GTAAAAATATAACGAGGGCTCGCAGCATCCTTGCCACCATGTAGCCTGGTACCAAACTGA 3159518 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| |||||| || || || | ||||| || ||||| |||||||||||||||||| Sbjct 3159517 CCAATCGGCTGCAGTAGATTAACATTGTTACTTCCAACAAAATTTTGAGCCAAGTTGACA 3159458 Query 117425 ATCGT 117429 || || Sbjct 3159457 ATAGT 3159453 >seq282667 Length=754430 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | |||||| | || || ||||| ||||| || || ||||| Sbjct 468417 GTGAAGATGTATCGAGGGCTGGCAGAGTCTTTTCCACCGTGCAGCCTGGTACCGAACTGC 468476 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||||| || || |||||||| ||| |||||| ||||||||||||||||| | | Sbjct 468477 CCAACGGGCTGTAGCAGATTGAGGTTATTGCTGCCCACAAAATTCTGAGCCAAATTAATA 468536 Query 152149 ATCGT 152153 || || Sbjct 468537 ATGGT 468541 >seq283574 Length=3212210 Score = 86.0 bits (94), Expect = 7e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | ||||| || || | || ||||||||||| || | ||||||| Sbjct 1560528 TCATCTCTGCTAATGAGCTCATTGGAGAATGTCAGTCCAGGCATAAGACCCCTCTTCTTC 1560469 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 | |||||| || ||| || ||||| ||||||||| ||||| || |||||||| Sbjct 1560468 AGCCAAAATATAGCAGCAAAAGAACCCGAGAAGAAGATTCCTTCCACTGCAGCAAAGGCA 1560409 Query 74892 AC 74893 || Sbjct 1560408 AC 1560407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545255461876000