Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq284675 163 3e-35 seq209978 98.7 1e-15 seq285083 87.8 2e-12 >seq284675 Length=1105255 Score = 163 bits (180), Expect = 3e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| || || | || |||||||| || || || || || ||| | | Sbjct 341647 AATGCAGATCTTTGTAAAAACCTTGACTGGCAAGACCATCACGCTAGAAGTAGAGCCCAG 341588 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||||| ||| | ||||| ||||| |||||||| || || ||||||||||| || Sbjct 341587 TGACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCAGATCA 341528 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | | || |||||||| ||||| || || |||| || ||||| ||||||| || Sbjct 341527 GCAGAGGTTGATCTTTGCTGGGAAGCAGCTAGAAGATGGGCGCACCCTGTCAGACTACAA 341468 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || ||||||||||| || | ||| |||| || || ||||| Sbjct 341467 CATCCAGAAAGAATCCACTCTGCACTTGGTCCTGCGCCTCCGGGGTGG 341420 >seq209978 Length=1003 Score = 98.7 bits (108), Expect = 1e-15 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 80948 ACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTG 81007 |||| || ||||| ||||||| || |||| || || |||||||| | |||||| Sbjct 459 ACTCCACTATTTCTGTGCACAGGTTGCTGCACTTGATGGTTCCCAGGTTCTGCTGGTTGC 518 Query 81008 ACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACT 81067 ||| || |||| ||||||||| ||||||| ||||| || |||||| ||| |||| Sbjct 519 TCTTCCTATTACAAGAGTCCTTGTACAACATGTAAGGGGTTCCTGTCTCGGTCTGAGACT 578 Query 81068 TGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGG 81111 | |||||| | ||| | || | ||||| |||||||||||| Sbjct 579 CTATGATGGCATACCAGAGCTGCTGGGCCTTCACCACCTTGCGG 622 >seq285083 Length=8456797 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 27517 CCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCA 27576 || ||||||||| | || || |||||||| ||||| || || |||| || ||||| | Sbjct 3013774 CCTGACCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCT 3013715 Query 27577 GACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||| || |||| ||||||||||| || ||||| || ||||||| | ||||| Sbjct 3013714 GACTACAACATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGTCTGAGAGGTGG 3013659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568267120414400