Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= NC_028238.1 Length=188534 Score E Sequences producing significant alignments: (Bits) Value seq283819 113 5e-20 seq147392 82.4 9e-11 >seq283819 Length=3435520 Score = 113 bits (124), Expect = 5e-20 Identities = 127/170 (75%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 32661 ATAGCCAGAGCCTTGTGGTTATATTTTATCTCTAAAGGTATAGAATATCTAGATACTATT 32720 ||||| | || || |||| || || |||| ||||| || || || || || || || Sbjct 361504 ATAGCTGGTGCTTTATGGTGGTACTTCCTCTCAAAAGGAATTGAGTACCTGGACACAATA 361563 Query 32721 TTCTTCATAATGAGAAAGAAATTTAACCAAGTTAGCTTTTTGCACGTATACCACCATTTT 32780 || ||||| |||| ||||||||||||||| | || || | ||||| || |||||||| Sbjct 361564 TTTTTCATCCTGAGGAAGAAATTTAACCAAATCAGTTTCCTTCACGTCTATCACCATTTC 361623 Query 32781 ACCATGTTTACTTTAGGATGGATAGGGATTAAATGGTTTGCAGGAGGACA 32830 || ||||| ||||| | ||||| || || || ||| || |||||||||| Sbjct 361624 ACTATGTTCACTTTGTGGTGGATTGGTATCAAGTGGGTTCCAGGAGGACA 361673 Score = 105 bits (116), Expect = 8e-18 Identities = 112/145 (77%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 32960 GATGCAGTTTCATTTAGCAATAGGTCATACAGCAATGTCTATATATATAGATTGTCCGTT 33019 ||| ||||| ||| | | | || || ||||| |||||||| ||||| || ||||| || Sbjct 1909089 GATTCAGTTCCATGTGACTCTGGGCCACACAGCCATGTCTATTTATATCGACTGTCCCTT 1909148 Query 33020 CCCTAGATGGATACAGTGGGCTGTTATTATATATTCTATCACCTTTATCATCCTTTTTGG 33079 ||||| |||||| || |||| ||| || || ||| ||||||||||||| || | || || Sbjct 1909149 CCCTAAATGGATGCACTGGGGTGTAATGATCTATGCTATCACCTTTATTTTCTTGTTCGG 1909208 Query 33080 CAACTTTTA-TCTCAGGACATATAA 33103 ||||| || | || |||||||||| Sbjct 1909209 TAACTTCTACTATC-GGACATATAA 1909232 Score = 84.2 bits (92), Expect = 3e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 32832 GCATTTTTTGGAGCACAGATAAATTCTTTTATACATGTTATAATGTATAGTTATTACGGA 32891 || ||||||||||| || || ||||||||||| |||||| | ||||| | || |||||| Sbjct 363922 GCTTTTTTTGGAGCCCAAATGAATTCTTTTATTCATGTTGTTATGTACATGTACTACGGA 363981 Query 32892 TTAACAGCAATAGGTCCTTCCTTGCGAAAATATCTATGGTGGAAAAAATATTTAACTATC 32951 ||| | || || ||| || | |||||||| ||||||||| ||| || || || Sbjct 363982 TTAGCTGCCTGTGGCCCTAAATTTCAGAAATATCTGTGGTGGAAACGATACTTGACCATA 364041 Query 32952 ATACAA 32957 ||||| Sbjct 364042 TTACAA 364047 >seq147392 Length=1177 Score = 82.4 bits (90), Expect = 9e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 50969 ACATTGGCTATAACTACCTGATGGTGATATTTACTTAACGCGTTCTTGGCTCTATCTATT 51028 ||||| ||||| || |||||||| |||| | || ||| || | |||| ||| Sbjct 558 ACATTAGCTATCACCACCTGATGACGATACAGCTCCAGAGCCTTCCGGGATTTATCAATT 499 Query 51029 AGTATTTCTTCATTTGTTTCTAGTTTAAAGGAAACAACAAATGCTTTTGGGGCCCATTCG 51088 | || | || ||||||| |||||||||| ||||||||||| ||||||||||| Sbjct 498 AAGATGGATGGATCAGTTTCTAACTTAAAGGAAATAACAAATGCTTCAGGGGCCCATTCT 439 Query 51089 TTAACTAAATGGGCCATCATTTTAGGAACGGCCTTCAT 51126 || |||||| | | || |||||| || || |||||| Sbjct 438 TTGACTAAAGGTGACAGCATTTTTGGCACCATCTTCAT 401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 601019753988800