Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq286078 152 7e-32 >seq286078 Length=3490189 Score = 152 bits (168), Expect = 7e-32 Identities = 180/241 (75%), Gaps = 6/241 (2%) Strand=Plus/Minus Query 13607 AGACTACGTGAACATGACGGCCGACTGCGTGGCCTTCGTGAAAGACAGGGGGTA-TCTCG 13665 ||| ||| |||||||||| ||||||| | |||| |||| | || || | | Sbjct 2759710 AGATTACCTGAACATGACTCAGGACTGCGCGCTCTTC---AAAGCCGGGCGGAGGTTTAT 2759654 Query 13666 TGAGGCCCC--TGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCA 13723 |||| |||| ||||| ||| |||| || || || ||||||||||| || ||| | || Sbjct 2759653 TGAGTCCCCCCTGAGCAAGGAGGAGGAGGATTTCCCGATCGCCTACTCCATGGTGGTGCA 2759594 Query 13724 CCACAAGATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTA 13783 | | |||||||||||||||||| | || ||| || |||||||||| || |||||| |||| Sbjct 2759593 CGAGAAGATCGAGATGTTCGAGAGGCTGCTGCGGTCCATCTACGCGCCCCAGAACATCTA 2759534 Query 13784 CTGCGTCCACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGC 13843 |||||||||||||||| ||||||| | |||||||| || ||| || |||||| Sbjct 2759533 CTGCGTCCACGTGGACCTCAAGTCCCCGGCCGAGTTCAAGGAGGCCGTGCGGGGCATCGC 2759474 Query 13844 C 13844 | Sbjct 2759473 C 2759473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 656379102131200