Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq283893 120 3e-22 >seq283893 Length=4807905 Score = 120 bits (132), Expect = 3e-22 Identities = 120/156 (77%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675 |||||| || ||||| || |||||||| | ||||| || || ||||| |||||||||| Sbjct 4300416 GACATGGGCAATCATATATGTGAGCAGTGAATAACTGGCGATATTGAAAGGCACCCCTAG 4300475 Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAA 6735 ||||||||||| |||| ||||| | |||||| ||||| || ||||| || || || Sbjct 4300476 TCCCATGTCTCCAGATCTCTGATACAACTGGCAAGACAGTTCACCATTTAGAACATAAAA 4300535 Query 6736 TTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAG 6771 ||||| |||| |||||| || || | ||||| || Sbjct 4300536 CTGGCAAAGGGCGTGGCATGGAGGCAAAGCCATTAG 4300571 Score = 120 bits (132), Expect = 3e-22 Identities = 120/156 (77%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 34574 CTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTG 34633 || ||||| | || || |||||| |||| ||||| || || || ||||| || ||| Sbjct 4300571 CTAATGGCTTTGCCTCCATGCCACGCCCTTTGCCAGTTTTATGTTCTAAATGGTGAACTG 4300512 Query 34634 TCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCT 34693 || |||||| | ||||| |||| ||||||||||| |||||||||| ||||| || || Sbjct 4300511 TCTTGCCAGTTGTATCAGAGATCTGGAGACATGGGACTAGGGGTGCCTTTCAATATCGCC 4300452 Query 34694 AGTTACGCTCTGCTCACGTACATGATCGCTCATGTC 34729 ||||| | |||||||| || ||||| || |||||| Sbjct 4300451 AGTTATTCACTGCTCACATATATGATTGCCCATGTC 4300416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 446656387886400