Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03]
286,620 sequences; 1,931,078,847 total letters
Query= NC_029255.1
Length=129563
Score E
Sequences producing significant alignments: (Bits) Value
seq283893 111 1e-19
seq283888 104 2e-17
>seq283893
Length=4807905
Score = 111 bits (122), Expect = 1e-19
Identities = 121/161 (75%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593
|| ||||| | || |||||||| ||||| | || || ||||| | ||| |||||
Sbjct 4300408 AGGCCTGTGACATGGGCAATCATATATGTGAGCAGTGAATAACTGGCGATATTGAAAGGC 4300467
Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653
|| || || ||||||||| | |||||||| ||||| |||||||| || || || ||| |
Sbjct 4300468 ACCCCTAGTCCCATGTCTCCAGATCTCTGATACAACTGGCAAGACAGTTCACCATTTAGA 4300527
Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694
||||||||||| | | | ||| |||||||||| | ||||
Sbjct 4300528 ACATAAAACTGGCAAAGGGCGTGGCATGGAGGCAAAGCCAT 4300568
>seq283888
Length=1437764
Score = 104 bits (114), Expect = 2e-17
Identities = 107/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304
|| || || ||||| |||||||||||| | |||||||| | || || || ||||||||
Sbjct 538177 GTGGTGGAGGAGCTATTCCGAGATGGGATTAACTGGGGAAGGATCGTGGCCTTCTTTGAA 538118
Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364
|||||||| || ||||||||||| || ||||| | | || | | || || |||| |
Sbjct 538117 TTTGGTGGCGTGATGTGTGTGGAGAGTGTCAACCGGGAGATGTCTCCTCTTGTGGACAGC 538058
Query 3365 ATTGCCGCGTGGATGACAGA 3384
||||| | ||||||||| ||
Sbjct 538057 ATTGCTGTGTGGATGACTGA 538038
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 413028957413680
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |