Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq284675 140 7e-28 seq130642 104 5e-17 seq285083 93.3 1e-13 seq285824 86.0 1e-11 >seq284675 Length=1105255 Score = 140 bits (154), Expect = 7e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||| |||||||| ||||| |||||||| || || | ||||| | |||||| Sbjct 341435 AGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCATCT 341494 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || || ||||| | | || || || ||||||| ||||| |||||| Sbjct 341495 TCTAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCC 341554 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || || || || || ||||||||| | || || || || ||||| ||| Sbjct 341555 TGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCTAGCGTGATGGTC 341614 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || | || |||||||| | ||||||||| Sbjct 341615 TTGCCAGTCAAGGTTTTTACAAAGATCTGCATTTT 341649 >seq130642 Length=457 Score = 104 bits (114), Expect = 5e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 210993 TGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTG 211052 || |||||||| |||| ||||| |||||||||||||| |||||| || || ||||| Sbjct 455 TGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGGATCTTGGCTTTCACATTCTCAATGGTA 396 Query 211053 TCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGC 211112 ||| | ||||||||| | ||||| ||||| || || |||||||| ||||| | |||| Sbjct 395 TCACTGGGTTCAACCTCTAAGGTGATGGTCTTGCCAGTCAGAGTCTTCACAAAGATCTGC 336 Query 211113 AT 211114 || Sbjct 335 AT 334 >seq285083 Length=8456797 Score = 93.3 bits (102), Expect = 1e-13 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || || |||||||| |||||||| || || || | ||||| | |||||| Sbjct 2095698 AGCACAAGATGGAGGGTGGACTCCTTTTGGATATTGTAGTCGGATAGGGTGCGGCCATCT 2095757 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAA 211008 |||||||||||||| || ||||| || | || |||||||| |||| Sbjct 2095758 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAA 2095803 Score = 86.0 bits (94), Expect = 1e-11 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 211018 TGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGA 211077 ||||||||||||| |||||| || || ||||||||| | ||||||||| || |||| Sbjct 3013561 TGTCCTGGATCTTGGCTTTCACATTCTCAATGGTGTCACTGGGTTCAACCTCTAGGGTGA 3013620 Query 211078 TCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 | ||||| || || || ||||| ||||| | |||||| Sbjct 3013621 TTGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 3013657 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || || ||||| || || |||||||| || || | ||||| | |||||| Sbjct 3013674 AGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 3013733 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGG 211003 |||||||||||||| || ||||| || | || |||||||| Sbjct 3013734 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGG 3013774 >seq285824 Length=1342290 Score = 86.0 bits (94), Expect = 1e-11 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 210925 CTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGA 210984 |||| |||||||| || || | ||||| | ||||| ||||||||||| || ||||||| Sbjct 581831 CTTTCTGGATGTTGTAGTCTGAGAGGGTACGCCCATCCTCCAGCTGCTTTCCAGCGAAGA 581890 Query 210985 TAAGGCGTTGTTGGTCAGGAGG 211006 | || ||||||||||||||||| Sbjct 581891 TCAGACGTTGTTGGTCAGGAGG 581912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1154895224376300