Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq284675 161 2e-34 seq284337 116 9e-21 >seq284675 Length=1105255 Score = 161 bits (178), Expect = 2e-34 Identities = 170/224 (76%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | |||||| | ||| |||||||||||||| |||| ||||| || | || || Sbjct 341426 CGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTG 341485 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||||||||||||||||||| ||||| | | || || || || ||||| ||| Sbjct 341486 CGCCCATCTTCTAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCT 341545 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 || ||||| ||||| || ||| ||| || |||||||| || || || |||| | Sbjct 341546 TCTTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCTAGC 341605 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| |||||||| ||||| ||||||| || | |||||||| Sbjct 341606 GTGATGGTCTTGCCAGTCAAGGTTTTTACAAAGATCTGCATTTT 341649 >seq284337 Length=2654838 Score = 116 bits (128), Expect = 9e-21 Identities = 130/174 (75%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 7558 TACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTT 7617 ||||| || ||| | || || ||||| |||||||| || |||||| | || || || || Sbjct 507975 TACAATGTAATTGTCACAGCACATGCTTTTGTTATAATCTTCTTTATGGTGATACCCGTA 508034 Query 7618 ATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCT 7677 || || ||||| || || || ||| || |||||||| || || ||||| || || || Sbjct 508035 ATAATCGGCGGCTTTGGTAACTGACTCACACCTTTAATAATCGGAGCTCCAGACATAGCA 508094 Query 7678 TTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTTCTA 7731 |||||| | | ||||||||||| || ||| || |||| || || ||| ||||| Sbjct 508095 TTTCCATGAATAAACAATATAAGCTTCTGACTATTACCCCCATCTTTACTTCTA 508148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1188151845314280