Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq283574 104 2e-17 seq284051 102 7e-17 >seq283574 Length=3212210 Score = 104 bits (114), Expect = 2e-17 Identities = 95/120 (79%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 4931 TACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATAT 4990 ||| || ||||| ||||| || || ||||||||||||||||| |||| ||||||||| || Sbjct 1552661 TACCAAATTTTCATTTACAATTCCATCACTGGCTGCAAAAAAAGCCAGAACATGAGAGAT 1552602 Query 4991 AAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAAC 5050 ||||| | ||| || | || || || |||||||| || || || || | ||||||||| Sbjct 1552601 GAAGTATTTTTCTTCTGATTTCAGCTTGTTCCAGTGAGGAAAGTCCTTCGATAAATCAAC 1552542 Score = 98.7 bits (108), Expect = 8e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||||||||| || || || || || || | ||| ||||| | ||| ||||| || Sbjct 1560528 TCATCTCTGCTAATGAGCTCATTGGAGAATGTCAGTCCAGGCATAAGACCCCTCTTCTTC 1560469 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 |||||||||||||| ||||| || || || ||||| || ||||| || || ||||| || Sbjct 1560468 AGCCAAAATATAGCAGCAAAAGAACCCGAGAAGAAGATTCCTTCCACTGCAGCAAAGGCA 1560409 Query 4692 AC 4693 || Sbjct 1560408 AC 1560407 >seq284051 Length=2145588 Score = 102 bits (112), Expect = 7e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 4808 TGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTAT 4867 ||| |||| ||| ||||||||||| || || || |||||||| |||||||||||||| || Sbjct 1500441 TGGATCTTTAATGTAAGTGTCTATGAGCAGACTGTACATTTCTGAATGTATATTTTCCAT 1500500 Query 4868 AGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCT 4927 ||||||||| || || || || | | |||||| |||| || ||||| | | |||| Sbjct 1500501 AGCAATCTGGAAGCCATAGAAAAAGCGAGCTTCAGTTATCTGTACTTCTTGGCTGAATCG 1500560 Query 4928 TTCTAC 4933 ||| || Sbjct 1500561 TTCCAC 1500566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425557838344460