Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq207829 129 8e-25 seq284051 100 4e-16 seq254492 91.5 2e-13 seq189952 89.7 7e-13 seq283574 87.8 2e-12 seq162555 87.8 2e-12 >seq207829 Length=4015 Score = 129 bits (142), Expect = 8e-25 Identities = 131/171 (77%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| || |||||||||||||| || |||||| ||| | || || || ||||| || | Sbjct 1333 TCCACCCATAGAAATGCATGCTGGTGAGTTTGCCATAGTTGGGCTCTGCAATATGGATGT 1274 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 ||| ||||| || |||||||||||||| ||||| ||||| |||||||| | |||||||| Sbjct 1273 TCAGGGACTGGCTCTGATCGATGAAAGCGCCTCTGTCAGCTGCCATTTTGAGAATGGTCT 1214 Query 76969 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 77019 | || | |||||||| | || || | | || || | |||||||||| Sbjct 1213 TCTGGGAGATTTCCCAGACTGTCTTATAGAGCTGCTTCAAGTCATCTGGAA 1163 >seq284051 Length=2145588 Score = 100 bits (110), Expect = 4e-16 Identities = 115/153 (75%), Gaps = 4/153 (3%) Strand=Plus/Plus Query 47790 GTTC-TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTC---TTGAGACATAACTCC 47845 |||| |||||||||| |||| | || ||| |||||| || ||||| ||||| Sbjct 1496240 GTTCATTTAAAAGTCTGCATCCAGAGTGAAAGAGTTATCTGTGGATTTTGACATTACTCC 1496299 Query 47846 CATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATAT 47905 ||| || || ||||| || || || ||||| || || ||||| || ||||||| ||| || Sbjct 1496300 CATCTTCTGGTATTCTCCTACTCGCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAGAT 1496359 Query 47906 ATTTTCCATAAAATCAAATGGATTAACTGCATT 47938 ||| ||||| || ||||||||||| |||| || Sbjct 1496360 ATTCTCCATGAAGTCAAATGGATTCTCTGCTTT 1496392 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 ||||||||||| || | ||| |||||||| ||||| || ||||||| || | || || Sbjct 1497779 TCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAACCCTCTCTTCTTC 1497838 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 |||||||| || | || || || || || ||||| || ||||| || || ||||| || Sbjct 1497839 AGCCAAAAGATAGATGCAAAGGAGCCGGAGAAGAAGATTCCTTCCACTGCTGCAAAAGC 1497897 >seq254492 Length=3707 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || | || ||||||||||| |||||||| || ||||| || || ||| Sbjct 619 GTGCCAGCATTGAAGAGGGTGGGAGATGCATGAGTAAACCACTTCTCAGACAGGAGGTTG 678 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 ||||||||||| || | |||||||| || || ||||| || | || | ||||| | Sbjct 679 TATGTTTCAATTGCAGCATCTATGTCATTTTTGTGGATTCCCACTGAAACCCTCATCAGC 738 Query 78519 ATATGCTGAGGTCTTTCA 78536 || || || || | |||| Sbjct 739 ATGTGTTGGGGGCGTTCA 756 >seq189952 Length=2645 Score = 89.7 bits (98), Expect = 7e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||| ||||| || | ||||| || ||||| || |||||||| || || || | || Sbjct 303 TGAAACTCTCCCGAAAGGACTCTGCGCGTGTAGATGTTACTGGTGTAGGGCTCAATGGAC 362 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGG 77230 || || || ||||| || ||||||||||||||||||||||| || Sbjct 363 TCGTTATTCCCCAAGATCTGAGCAGTAGAAGCAGTTGGCATTGG 406 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 77364 TATGTTTCATAAGGTCCTT-CTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTA 77422 || |||||||| || || | || |||| || ||||| || || | |||||| || ||||| Sbjct 1595 TAAGTTTCATATGGCCCATACTCTTTC-GCAAGTTCGCAGCTGGATTCCAAAGCACCGTA 1653 Query 77423 ATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATA 77482 |||||| || || ||||||| || || || ||| || || || ||||| ||||| Sbjct 1654 ATAAATGGTCTCAAAAATCTGCTGGTTCAGCAATTGGGCCTCGGGGCTTTCAAAGGGATA 1713 Query 77483 ATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCT 77542 | || || || |||||||| | || || || ||||| ||||| || | ||| | Sbjct 1714 TCTCATCAGGATGAACGCATCTGCCAGACCTTGCACCCCAATGCCAATGGGGCGATGGCG 1773 Query 77543 CTTATTGGAAAT 77554 || ||||| || Sbjct 1774 TTTGTTGGAGAT 1785 >seq283574 Length=3212210 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 48639 ACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACTG 48698 || ||||| | ||||| ||||| || | ||| ||||||||||| ||||| ||||| | Sbjct 1391956 ACCTCTTCTACAGTCCAGAATGAAGCTTGTGCCTTTTTATACATTTTCCACATATCCGGG 1391897 Query 48699 TATTGGATTGGGAAAATAACAAATCTATTTGGATTTTTTGCAAGGATAGGTTC 48751 ||||| | |||||| || ||||||| || ||||||||| || | |||||| Sbjct 1391896 TATTGCAGTGGGAAGATGACAAATCGATGAGGATTTTTTCTGAGAAGAGGTTC 1391844 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| ||||| | || || || ||||| || || ||||| || || | || || Sbjct 1560528 TCATCTCTGCTAATGAGCTCATTGGAGAATGTCAGTCCAGGCATAAGACCCCTCTTCTTC 1560469 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||||||||| || || ||||| || || ||||| || ||||| || || ||||| || Sbjct 1560468 AGCCAAAATATAGCAGCAAAAGAACCCGAGAAGAAGATTCCTTCCACTGCAGCAAAGGC 1560410 >seq162555 Length=1600 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062 || |||||||| ||||||||||| ||||| || |||| || || || | || || || Sbjct 663 ACCCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAACAGGTCCCTGGCTCGCTGC 604 Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122 || || || || || ||||| || || || |||||||| | ||||| ||||||| || Sbjct 603 TCCTCCTTCCCAGTGTTCTTCTTCAGGTCAAGAAACTCAAAGATATCCAAATGCCACGGC 544 Query 78123 TCTAGATATATTGCCATAACTCCAGGTC 78150 || || || || || | | ||||||| Sbjct 543 TCCAGGTAGATGGCAAAGGCCCCAGGTC 516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 692179975356800