Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq207829 129 8e-25 seq283574 102 1e-16 seq284051 95.1 2e-14 seq189952 95.1 2e-14 seq254492 89.7 7e-13 >seq207829 Length=4015 Score = 129 bits (142), Expect = 8e-25 Identities = 131/171 (77%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||| || |||||||||||||| || |||||| ||| | || || || ||||| || | Sbjct 1333 TCCACCCATAGAAATGCATGCTGGTGAGTTTGCCATAGTTGGGCTCTGCAATATGGATGT 1274 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 ||| ||||| || |||||||||||||| ||||| ||||| |||||||| | |||||||| Sbjct 1273 TCAGGGACTGGCTCTGATCGATGAAAGCGCCTCTGTCAGCTGCCATTTTGAGAATGGTCT 1214 Query 75564 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 75614 | || | |||||||| | || || | | || || | |||||||||| Sbjct 1213 TCTGGGAGATTTCCCAGACTGTCTTATAGAGCTGCTTCAAGTCATCTGGAA 1163 >seq283574 Length=3212210 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| ||||| | || || || ||||| || |||||||| || || | ||| || Sbjct 1560528 TCATCTCTGCTAATGAGCTCATTGGAGAATGTCAGTCCAGGCATAAGACCCCTCTTCTTC 1560469 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 |||||||||||||| || ||||| || || ||||| || ||||| || || || || || Sbjct 1560468 AGCCAAAATATAGCAGCAAAAGAACCCGAGAAGAAGATTCCTTCCACTGCAGCAAAGGCA 1560409 Query 46774 ACAAGTCTCTCTCC 46787 || | |||||| || Sbjct 1560408 ACCACTCTCTCCCC 1560395 >seq284051 Length=2145588 Score = 95.1 bits (104), Expect = 2e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 ||||||||||| || | ||| |||||||| ||||| |||||||||| || | ||| || Sbjct 1497779 TCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAACCCTCTCTTCTTC 1497838 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 |||||||| |||| || || || || || ||||| || ||||| || || || || || Sbjct 1497839 AGCCAAAAGATAGATGCAAAGGAGCCGGAGAAGAAGATTCCTTCCACTGCTGCAAAAGCT 1497898 Query 46774 AC 46775 || Sbjct 1497899 AC 1497900 Score = 95.1 bits (104), Expect = 2e-14 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949 |||||||| || || ||||| | ||||| |||||||||||||| || ||||| ||||| Sbjct 1500444 ATCTTTAATGTAAGTGTCTATGAGCAGACTGTACATTTCTGAATGTATATTTTCCATAGC 1500503 Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTC 47009 ||||| || || || ||| | | |||||||| |||||||| ||| | |||||||| Sbjct 1500504 AATCTGGAAGCCATAGAAAAAGCGAGCTTCAGTTATCTGTACTTCTTGGCTGAATCGTTC 1500563 >seq189952 Length=2645 Score = 95.1 bits (104), Expect = 2e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 75959 TATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAA 76018 || ||||| || | ||| | || || || |||||||| || | || || ||||||||| Sbjct 1595 TAAGTTTCATATGGCCCATACTCTTTCGCAAGTTCGCAGCTGGATTCCAAAGCACCGTAA 1654 Query 76019 TAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATAA 76078 ||||| || || ||||||| || || || ||| || || | || ||||| ||||| Sbjct 1655 TAAATGGTCTCAAAAATCTGCTGGTTCAGCAATTGGGCCTCGGGGCTTTCAAAGGGATAT 1714 Query 76079 TGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTC 76138 | || || || |||||||| || || || || ||||| ||||| || | ||| | Sbjct 1715 CTCATCAGGATGAACGCATCTGCCAGACCTTGCACCCCAATGCCAATGGGGCGATGGCGT 1774 Query 76139 TTATTGGAAATTTCAGC 76155 || ||||| || || || Sbjct 1775 TTGTTGGAGATCTCGGC 1791 >seq254492 Length=3707 Score = 89.7 bits (98), Expect = 7e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || ||||| || | || |||||||||||||| ||||| || ||||| || || ||| Sbjct 619 GTGCCAGCATTGAAGAGGGTGGGAGATGCATGAGTAAACCACTTCTCAGACAGGAGGTTG 678 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 ||||||||||| | || ||||| || || || ||||| || | || | ||||| | Sbjct 679 TATGTTTCAATTGCAGCATCTATGTCATTTTTGTGGATTCCCACTGAAACCCTCATCAGC 738 Query 77114 ATATGCTGAGGTCGTTC 77130 || || || || ||||| Sbjct 739 ATGTGTTGGGGGCGTTC 755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 710380134278400