Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq283224 125 1e-23 seq282804 123 4e-23 >seq283224 Length=1912038 Score = 125 bits (138), Expect = 1e-23 Identities = 171/238 (72%), Gaps = 2/238 (1%) Strand=Plus/Minus Query 8363 AACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTC 8422 || ||||| | ||| || |||||||| |||||||||||| | || || ||||| | || Sbjct 1455484 AAGCCCACTTTTCCACCAAAGGTGCTAGGCTTCCAGTACTCAGGAGAACAGATAGCATTT 1455425 Query 8423 GCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATG 8482 |||| |||||||| | ||||| || || || | || | ||| ||||||| || ||| Sbjct 1455424 CCCATAAGGCCTTTCAAAGAGAATGGTGCGCCAAGTTCCACCATGGTCTCACCAAAAATG 1455365 Query 8483 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCT 8542 || ||||| ||| | || || | | || | ||||||||||| ||| || | |||| Sbjct 1455364 GCACCAGGACGAGGCCTCTCTACTAGAAGGCCAGGGTACAGCTCCATAGCATCAATGTCT 1455305 Query 8543 CCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT--TTTATTAATAAA 8598 || ||||| | | ||| || || || || ||||||||||| | ||||||||| Sbjct 1455304 CCATAAAGCTCTTCTAATTCAGCTGCCATTTCTTTTTCTCCTGTAATAAATTAATAAA 1455247 >seq282804 Length=1570610 Score = 123 bits (136), Expect = 4e-23 Identities = 191/273 (70%), Gaps = 0/273 (0%) Strand=Plus/Minus Query 8313 TGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCCCACGT 8372 |||||||| ||| || || ||| | | || |||| |||||| |||| || Sbjct 601230 TGACGTTGAGACACACCAGCTTCTGGAGCGACGCTGTCTTCACGATCTCGAAGCCAGTTG 601171 Query 8373 CTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGC 8432 | |||||||| ||||||||||||||||| |||||||||| ||| ||| | | || | Sbjct 601170 CGCCGCCGAACGTGCTGGGCTTCCAGTATTCCGGGGAGCAAATGGGGTTTCCGAACAGCC 601111 Query 8433 CTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGAC 8492 |||| |||||||| || || ||| ||| | |||||||| || || || | ||| || Sbjct 601110 CTTTCAGGGAGAAGGGGGCTCCCGTCTCCACCATGCTCTCCCCAAACATAGAGTTCGGCT 601051 Query 8493 GGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGG 8552 ||||||| || | || || || ||| | ||||| || | | ||||| ||| || Sbjct 601050 GGGGCTTCTCGAGCAGCAAGCCCACGTAAAACTCCATGGCATTAATGTCTCTGTAGAGCT 600991 Query 8553 CCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 | || || || || ||||||| |||||||| Sbjct 600990 CTTCCAGCTCCGCTGCCATCTCCTCTTCTCCTG 600958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 714308409644800