Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq284675 113 1e-19 seq285824 109 1e-18 seq130642 84.2 5e-11 >seq284675 Length=1105255 Score = 113 bits (124), Expect = 1e-19 Identities = 157/216 (73%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || || || ||||| | || || || || ||||| || || || || Sbjct 341649 AAAATGC---AGATCTTTGTAAAAACCTTGACTGGCAAGACCATCACGCTAGAAGTAGA- 341594 Query 177975 AGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC 178032 || ||| ||||||| ||||| ||||| || || |||||||||||||| || |||| Sbjct 341593 -GCCCAGTGACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTC 341535 Query 178033 CGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCG 178092 | || ||||| | | ||||| || || || ||||| |||||||| | || || | | Sbjct 341534 CAGATCAGCAGAGGTTGATCTTTGCTGGGAAGCAGCTAGAAGATGGGCGCACCCTGTCAG 341475 Query 178093 ATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 | || ||| |||| |||||||| || ||||| |||| Sbjct 341474 ACTACAACATCCAGAAAGAATCCACTCTGCA-CTTG 341440 >seq285824 Length=1342290 Score = 109 bits (120), Expect = 1e-18 Identities = 87/103 (84%), Gaps = 4/103 (4%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||||||||| || ||||| ||||| ||||||||||||||||| || ||| Sbjct 583335 CAGATCTTCGTGAAAACCCTGACAGGCAAAACCATCACCCTCGAGGTGGA--GCCCAGCG 583278 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 ||||||||||||||||||| |||||||||||||| ||||| Sbjct 583277 ACACCATCGAGAACGTCAAGGCCAAGATTCAGGACAAGGAAGG 583235 >seq130642 Length=457 Score = 84.2 bits (92), Expect = 5e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| ||||| || || || || |||||| | ||||| ||| | || Sbjct 337 CAGATCTTTGTGAAGACTCTGACTGGCAAGACCATCACCTTAGAGGTTGAACCCAGTGAT 396 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 ||||| ||||| || ||| ||||| |||||||||||||| || || || |||||||| Sbjct 397 ACCATTGAGAATGTGAAAGCCAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAGCA 455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1199310715344280