Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq76943 109 4e-19 seq85606 104 2e-17 >seq76943 Length=1194919 Score = 109 bits (120), Expect = 4e-19 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 |||||||||| ||||| || || |||||||| || |||||||| ||||| | ||| |||| Sbjct 639349 CTTTATATTCAGCTCCAAAGTGTCTCCACTGGAAACCATACACTGGTCCCAAATCCCCTT 639408 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 | |||| || ||||| ||||||| || ||| | |||||||| |||||||||| Sbjct 639409 CTGTTCTGCCAGGGAAACCTTGTTTATCCAAGAATTCACGTGATCCATTGGCATCCCAAA 639468 Query 102153 TGTGCACGCCAGCTGCTGATAGCTCTTT 102180 | | ||| || ||| || |||||||| Sbjct 639469 TCTTCACTCCTTTTGCAGAGAGCTCTTT 639496 >seq85606 Length=3741587 Score = 104 bits (114), Expect = 2e-17 Identities = 89/110 (81%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| || || |||| || || | |||||||||| ||||||| || || ||||||||||| Sbjct 1381625 CTTGAGCTCTCTGCTAAGCACTATATTAATTCTGTCTTTTAAGGGACGATTCTTCTCAGG 1381684 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCTG 4399 |||||||||||| ||| | |||||||| |||| |||||||||| ||| Sbjct 1381685 AATTGAGAACCAGGTCCTCTTACCCATTATCAACGCATTCTGTTTACCTG 1381734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360634713876773