Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq78831 93.3 5e-14 seq94266 89.7 6e-13 seq54353 89.7 6e-13 >seq78831 Length=713705 Score = 93.3 bits (102), Expect = 5e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| |||| ||||| | || ||||| || || ||||| ||||| || || | ||| | Sbjct 197042 CCTCATCTCGGCTAATGAGCTCATTGGAGAATGTCAGTCCAGGCATCAGACCCCTCTTCT 196983 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||||||||| | ||||| || || || ||||| || ||||| || || ||||||| Sbjct 196982 TCAGCCAAAATATAGCAGCAAAAGAACCTGAGAAGAAGATCCCTTCCACGGCAGCAAAGG 196923 Query 24277 CAATAAGTCTTTCTCC 24292 ||| | ||| || || Sbjct 196922 CAACCACTCTCTCCCC 196907 Score = 82.4 bits (90), Expect = 9e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 24632 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 24691 ||| ||||| ||||||| || || || | ||||||||||||||| ||||| || || | Sbjct 184871 CACCTCTTCTGCTGTCCAGAAGGAAGCTTGTGCCTTTTTATACATGTTCCATATATCCGG 184812 Query 24692 ATATTGAATTGGAAAAATAACAAATCTATTTGGATTTTTT 24731 ||||| | ||| || || ||||||||| ||||||||| Sbjct 184811 GTATTGGAGTGGGAAGATGACAAATCTACGAGGATTTTTT 184772 >seq94266 Length=584714 Score = 89.7 bits (98), Expect = 6e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084 || ||| |||||||| ||||||||||||||||| || || | || || ||||||| || Sbjct 89245 CTCCACCCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAGAGGTCTCTGGCTCG 89304 Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144 || ||||| || || || ||||| || || || || ||| | | ||| || | ||||| Sbjct 89305 CTGCTCCTCCTTCCCGGTGTTCTTCTTCAGGTCAAGAAACTCAAAAATGTCCAAGTGCCA 89364 Query 54145 CGGTTCCAAGTATATGG 54161 || |||| || |||| Sbjct 89365 TGGCTCCAGATAGATGG 89381 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| || | ||| || ||||||||||| | || || || || || || || ||||| | Sbjct 98515 CACTGAACACTTTCTTGGTTTCTTTGTGCAAGTTGGAGACTGCGATCCTTGCTGCTAGGA 98574 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 ||||||| || || || | || || || || ||| | || || | ||| || |||| Sbjct 98575 TGGCATAGTCGGGGTGCTTGGTGGTGAGGGTTGCAGCTGTCTCAGCAGCCAGTGTATCCA 98634 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 ||| || ||||| || ||| | |||| || ||||| |||||||| Sbjct 98635 GTTCCACTGTTGTGACACCACTGTATAGACCCTGGATCACCTTCAT 98680 >seq54353 Length=924 Score = 89.7 bits (98), Expect = 6e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084 || ||| |||||||| ||||||||||||||||| || || | || || ||||||| || Sbjct 625 CTCCACCCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAGAGGTCTCTGGCTCG 684 Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144 || ||||| || || || ||||| || || || || ||| | | ||| || | ||||| Sbjct 685 CTGCTCCTCCTTCCCGGTGTTCTTCTTCAGGTCAAGAAACTCAAAAATGTCCAAGTGCCA 744 Query 54145 CGGTTCCAAGTATATGG 54161 || |||| || |||| Sbjct 745 TGGCTCCAGATAGATGG 761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592682416505040