Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq76943 96.9 4e-15 seq75165 91.5 2e-13 >seq76943 Length=1194919 Score = 96.9 bits (106), Expect = 4e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809 ||||| |||| ||||| | ||| || || || || || || ||||| || ||||| ||| Sbjct 632466 AGGCCTGTGACATGGGCAATCATATACGTGAGAAGTGAATAACTGGCAATATTGAAAGGC 632525 Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869 ||||| || |||||||| || || | ||| |||| |||||| || || || || Sbjct 632526 ACCCCGAGTCCCATGTCTCCAGATCTCTGATACAACTGGCAAGACAGTTCACCATTTAGA 632585 Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910 || || ||||||||||| |||||| || |||| ||||| Sbjct 632586 ACATAAAACTGGCACAGAGCGTGGCATGGAGGCAAAGCCAT 632626 >seq75165 Length=4353056 Score = 91.5 bits (100), Expect = 2e-13 Identities = 234/347 (67%), Gaps = 12/347 (3%) Strand=Plus/Minus Query 176358 CCCGCCCTGTATCTGCTTG-TGTTTCTCTTTGGGTTGTTGGGCAATATCTTAGTGGTGAT 176416 ||| | ||||| || |||| || | | ||||| || |||||||| |||| ||| | Sbjct 2287319 CCCCCGCTGTA-CTCCTTGGTGCTGATATTTGGCCTGGTGGGCAATGCACTAGTTGTGCT 2287261 Query 176417 TATTGTCATAAGATACATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGC 176476 || | |||| ||||| || | | | || | | ||| |||| | ||| | || |||| Sbjct 2287260 GATCCTGATAAAATACAAGAGGCTGAGAAGCATGACTGACATCTATCTGCTGAATCTGGC 2287201 Query 176477 AATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACTATATTGGAATGTA 176536 ||| || || ||||| ||| || | | ||||||||||| |||| | | | | Sbjct 2287200 AATTTCCGATTTGCTTTTTATTCTTTCCCTGCCATTTTGGGCTTACTA---CGCA--GCA 2287146 Query 176537 TCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGC--TCAGGGGTGTGTGTTACATG 176594 | |||| ||| |||||| | | | |||||||| | | |||||||| | | | | || Sbjct 2287145 T-ATGAGTGGGATTTTGGAAATGCAATGTGTAAAATTCTTTCAGGGGTCTATTATGC-TG 2287088 Query 176595 TCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTT 176654 | | ||||| | |||| ||| || || | |||||||| || ||||| || || Sbjct 2287087 GC-TTCTACAGTGGAATTTTTTTCATAATACTTTTGACAGTAGATAGATATCTGGCCATT 2287029 Query 176655 GTCTATGCTGTAACTGCTTTGAGGTTTAGAACAGTAACCTGTGGCAT 176701 ||| |||| || |||||| | | ||| ||||| |||| |||||| Sbjct 2287028 GTCCATGCAGTGTTTGCTTTAAAGGCTAGGACAGTTACCTATGGCAT 2286982 Score = 91.5 bits (100), Expect = 2e-13 Identities = 234/347 (67%), Gaps = 12/347 (3%) Strand=Plus/Minus Query 9472 CCCGCCCTGTATCTGCTTG-TGTTTCTCTTTGGGTTGTTGGGCAATATCTTAGTGGTGAT 9530 ||| | ||||| || |||| || | | ||||| || |||||||| |||| ||| | Sbjct 2287319 CCCCCGCTGTA-CTCCTTGGTGCTGATATTTGGCCTGGTGGGCAATGCACTAGTTGTGCT 2287261 Query 9531 TATTGTCATAAGATACATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGC 9590 || | |||| ||||| || | | | || | | ||| |||| | ||| | || |||| Sbjct 2287260 GATCCTGATAAAATACAAGAGGCTGAGAAGCATGACTGACATCTATCTGCTGAATCTGGC 2287201 Query 9591 AATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACTATATTGGAATGTA 9650 ||| || || ||||| ||| || | | ||||||||||| |||| | | | | Sbjct 2287200 AATTTCCGATTTGCTTTTTATTCTTTCCCTGCCATTTTGGGCTTACTA---CGCA--GCA 2287146 Query 9651 TCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGC--TCAGGGGTGTGTGTTACATG 9708 | |||| ||| |||||| | | | |||||||| | | |||||||| | | | | || Sbjct 2287145 T-ATGAGTGGGATTTTGGAAATGCAATGTGTAAAATTCTTTCAGGGGTCTATTATGC-TG 2287088 Query 9709 TCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTT 9768 | | ||||| | |||| ||| || || | |||||||| || ||||| || || Sbjct 2287087 GC-TTCTACAGTGGAATTTTTTTCATAATACTTTTGACAGTAGATAGATATCTGGCCATT 2287029 Query 9769 GTCTATGCTGTAACTGCTTTGAGGTTTAGAACAGTAACCTGTGGCAT 9815 ||| |||| || |||||| | | ||| ||||| |||| |||||| Sbjct 2287028 GTCCATGCAGTGTTTGCTTTAAAGGCTAGGACAGTTACCTATGGCAT 2286982 Score = 86.0 bits (94), Expect = 7e-12 Identities = 227/341 (67%), Gaps = 12/341 (4%) Strand=Plus/Plus Query 9478 CTGTATCTGCTTG-TGTTTCTCTTTGGGTTGTTGGGCAATATCTTAGTGGTGATTATTGT 9536 ||||| || |||| || | | ||||| || |||||||| |||| ||| | || | Sbjct 2515288 CTGTA-CTCCTTGGTGCTGATATTTGGCCTGGTGGGCAATGCACTAGTTGTGCTGATCCT 2515346 Query 9537 CATAAGATACATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCAATATC 9596 |||| ||||| || | | | || | | ||| |||| | ||| | || ||||||| || Sbjct 2515347 GATAAAATACAAGAGGCTGAGAAGCATGACTGACATCTATCTGCTGAATCTGGCAATTTC 2515406 Query 9597 TGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACTATATTGGAATGTATCATGA 9656 || ||||| ||| || | | ||||||||||| |||| ||| ||||| Sbjct 2515407 CGATTTGCTTTTTATTCTTTCCCTGCCATTTTGGGCTTACTACGCAGGA------CATGA 2515460 Query 9657 TTGGACTTTTGGTATTTCCCTGTGTAAACTGC--TCAGGGGTGTGTGTTACATGTCACTG 9714 ||| |||||| | | | |||||||| | | |||||||| | | | | || | | Sbjct 2515461 GTGGGATTTTGGAAATGCAATGTGTAAAATTCTTTCAGGGGTCTATTATGC-TGGC-TTC 2515518 Query 9715 TACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTAT 9774 ||||| | |||| ||| || || | ||| |||| || ||||| || ||||| || Sbjct 2515519 TACAGTGGAATGTTTTTCATAATACTTTTGACAATAGATAGATATCTGGCCATTGTCCAT 2515578 Query 9775 GCTGTAACTGCTTTGAGGTTTAGAACAGTAACCTGTGGCAT 9815 || || |||||| | ||| ||||| |||| |||||| Sbjct 2515579 GCAGTGTTTGCTTTAAAAGCTAGGACAGTTACCTATGGCAT 2515619 Score = 86.0 bits (94), Expect = 7e-12 Identities = 227/341 (67%), Gaps = 12/341 (4%) Strand=Plus/Plus Query 176364 CTGTATCTGCTTG-TGTTTCTCTTTGGGTTGTTGGGCAATATCTTAGTGGTGATTATTGT 176422 ||||| || |||| || | | ||||| || |||||||| |||| ||| | || | Sbjct 2515288 CTGTA-CTCCTTGGTGCTGATATTTGGCCTGGTGGGCAATGCACTAGTTGTGCTGATCCT 2515346 Query 176423 CATAAGATACATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCAATATC 176482 |||| ||||| || | | | || | | ||| |||| | ||| | || ||||||| || Sbjct 2515347 GATAAAATACAAGAGGCTGAGAAGCATGACTGACATCTATCTGCTGAATCTGGCAATTTC 2515406 Query 176483 TGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACTATATTGGAATGTATCATGA 176542 || ||||| ||| || | | ||||||||||| |||| ||| ||||| Sbjct 2515407 CGATTTGCTTTTTATTCTTTCCCTGCCATTTTGGGCTTACTACGCAGGA------CATGA 2515460 Query 176543 TTGGACTTTTGGTATTTCCCTGTGTAAACTGC--TCAGGGGTGTGTGTTACATGTCACTG 176600 ||| |||||| | | | |||||||| | | |||||||| | | | | || | | Sbjct 2515461 GTGGGATTTTGGAAATGCAATGTGTAAAATTCTTTCAGGGGTCTATTATGC-TGGC-TTC 2515518 Query 176601 TACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTAT 176660 ||||| | |||| ||| || || | ||| |||| || ||||| || ||||| || Sbjct 2515519 TACAGTGGAATGTTTTTCATAATACTTTTGACAATAGATAGATATCTGGCCATTGTCCAT 2515578 Query 176661 GCTGTAACTGCTTTGAGGTTTAGAACAGTAACCTGTGGCAT 176701 || || |||||| | ||| ||||| |||| |||||| Sbjct 2515579 GCAGTGTTTGCTTTAAAAGCTAGGACAGTTACCTATGGCAT 2515619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589043995952920