Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq98373 125 9e-24 >seq98373 Length=1389828 Score = 125 bits (138), Expect = 9e-24 Identities = 216/308 (70%), Gaps = 8/308 (3%) Strand=Plus/Minus Query 83056 GAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCG 83115 ||| ||| || |||||||||||| | ||| | ||||||| | | ||||||| | Sbjct 952019 GAGGAGGCGCTGGATGTCGGGCTCGATGGCAATGGTCTGGAACTTGGGGCTGTAGCGTTT 951960 Query 83116 CACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCG 83175 | |||| || || | ||||||| |||||||||||||||||||| | ||||| ||| Sbjct 951959 GAAGGGCTCCCCCTCGGGCCCCACCAGGAACTTCTCGAAGTTCCAGGAGAGGTCGTCGCG 951900 Query 83176 GCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCT 83235 || || || ||| | | || || |||||||| || || | | |||||| Sbjct 951899 GCGCAGCGGGCTCCACACGACGAACTTGGGGTCGCCCATGAAGGCGGAGGGCTCGTCGGC 951840 Query 83236 AGGCGCCGGCA---GGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGC-CCTTGCACCGT 83291 || | |||| |||||| || ||| ||||||||| || || | | ||| |||| Sbjct 951839 CGGGGTGGGCAGGTGGGCCT-TC--AGGTAGGCGAAGACGGGGTGCACGTCCTGC-CCGT 951784 Query 83292 TGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGT 83351 | |||| ||| |||| |||||| | ||||| ||||||||||| |||||| || |||| Sbjct 951783 TCACCTGGCATTTCTGGAAGAGGGTGAAGTTGGGCTCGAAGCCAGCCCCAGGGCGCACGT 951724 Query 83352 GCTTCAGG 83359 |||||| Sbjct 951723 ATTTCAGG 951716 Score = 104 bits (114), Expect = 3e-17 Identities = 115/152 (76%), Gaps = 5/152 (3%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGC-TCCTAGG 83449 |||||| || |||||||| || ||||| || ||||| ||||||| | | | | | || Sbjct 950214 CCTGGTAGCCAAACTGGTTGCAAGGGAAGCCCAGCACGACCAGCCGCTGCGGGTACCGGG 950155 Query 83450 CGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCT 83509 | |||||||| ||||| ||| ||||| ||||| ||||| | ||||||||||| || Sbjct 950154 C----CTGCAGCTGGTTCAGCTGGGTGTAATCCCGCACCGTCGTGCCTCAGAGGGATGCC 950099 Query 83510 ACGTTCTCGATGAGCAAGACCCGGCCCCGTAA 83541 |||||||| || | | ||||||||||| || Sbjct 950098 ACGTTCTCAATCAAAACCACCCGGCCCCGGAA 950067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 607731230570920