Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq57837 102 2e-16 >seq57837 Length=2024552 Score = 102 bits (112), Expect = 2e-16 Identities = 104/133 (78%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 || ||||||||||| || | ||||||||||| |||||| ||||||||| || ||||| Sbjct 1236594 GCTTTTTTTGGAGCCCAAATGAATTCTTTTATTCATGTTGTTATGTACATGTACTATGGA 1236535 Query 52117 ATGGCCGCTTGTGGTCCTATGTT-CAGAAAGTATCTATGGTGGAAACGTTATCTTACTAT 52175 | || || ||||| |||| || |||||| ||||| ||||||||||| || | || || Sbjct 1236534 TTAGCTGCCTGTGGCCCTAAATTTCAGAAA-TATCTTTGGTGGAAACGATACTTGACCAT 1236476 Query 52176 AATGCAGTTGGTA 52188 | | || |||||| Sbjct 1236475 ATTACAATTGGTA 1236463 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 52189 CAGTTCCATATAGCTATAGGACATACTGCTATGTCCATTTACATAGATTGCCCGTTTCCA 52248 ||||||||| | || | || || || || ||||| ||||| || || || || || || Sbjct 1234347 CAGTTCCATGTGACTCTTGGCCACACAGCCATGTCTATTTATATCGACTGTCCCTTCCCT 1234288 Query 52249 AAATGGATACAGTGGTCAGTTATTATCTATTCTATTAGTTTCATATTACTGTTTGGTAAC 52308 |||||||| || ||| || || |||||| |||| | || || || ||||||||||| Sbjct 1234287 AAATGGATGCACTGGGGTGTAATGATCTATGCTATCACCTTTATTTTCTTGTTTGGTAAC 1234228 Query 52309 TTCTATTTTAGAACATACAA 52328 ||||| | | | ||||| || Sbjct 1234227 TTCTACTATCGGACATATAA 1234208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921580940180920