Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq78831 100 3e-16 seq10001 91.5 1e-13 >seq78831 Length=713705 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 15886 TTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTT 15945 ||| ||||| ||| |||| || ||||| || || | | || |||||||| | Sbjct 210501 TTAGAAATCTGCATCCAGAGTGAAAACATTGTCCGTTGTTTCTGCCATAACTGCAAAGCG 210442 Query 15946 TTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTC 16005 ||||| || ||| | ||| ||||||||||||||||||||||| | ||||||||| || Sbjct 210441 CTGATACTCTGAAACCCGCTTCTCAAAGAAATTTGTTTTTCCTTCCAGTGAAATATTCTC 210382 Query 16006 CATAAAATCAAAAGGATTTTTTG 16028 ||| ||||||||||| |||| || Sbjct 210381 CATGAAATCAAAAGGGTTTTCTG 210359 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 16268 CTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAAT 16327 || || | ||| || || ||||| || || ||||| || || | || || | ||||||| Sbjct 197031 CTAATGAGCTCATTGGAGAATGTCAGTCCAGGCATCAGACCCCTCTTCTTCAGCCAAAAT 196972 Query 16328 ATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGC 16387 ||||| ||||| ||||| || ||||| || ||||| || || ||||| ||||||| || | Sbjct 196971 ATAGCAGCAAAAGAACCTGAGAAGAAGATCCCTTCCACGGCAGCAAAGGCAACCACTCTC 196912 Query 16388 TCACC 16392 || || Sbjct 196911 TCCCC 196907 >seq10001 Length=4979691 Score = 91.5 bits (100), Expect = 1e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 16498 ATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGC 16557 |||| ||| ||||||||||| || | ||| |||||||||||||| || || ||||| || Sbjct 1099779 ATCTTTAATGTAAGTATCTATGAGCAGACTGTACATTTCTGAATGTATGTTTTCCATAGC 1099838 Query 16558 TATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC 16602 ||||| || ||||| || || | |||||| | || |||||||| Sbjct 1099839 AATCTGGAAGCCATAGAAACAGCGAGCTTCTGTTACCTGTACTTC 1099883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461702471027800