Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq21106 383 1e-101 seq80053 125 5e-24 >seq21106 Length=1945072 Score = 383 bits (424), Expect = 1e-101 Identities = 660/956 (69%), Gaps = 2/956 (0%) Strand=Plus/Plus Query 107670 AGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCG 107729 |||||||| | ||||||||||||| ||||| ||| || || || ||||| || || Sbjct 1329087 AGGAAGTTTGTCGAGTTCCCACTGAGCAAAGAGGAGGAGGATTTTCCTATTGCATATTCC 1329146 Query 107730 ATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCT 107789 ||||| || |||||||||||||| | || ||| | || | | || | || | || Sbjct 1329147 ATGGTAGTGCATGAGAAGATTGAGATATTCGAAAGATTGTTAAGGTCCATCTACACGCCC 1329206 Query 107790 CAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTC 107849 ||||| ||||||||||||||||| ||| | || |||| || ||||| ||||| ||| Sbjct 1329207 CAGAATATATACTGTGTCCACGTAGATCTAAAATCCCTGGACGAATTCAAGGAGGCAGTC 1329266 Query 107850 AAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTT 107909 | || || |||||| |||||||| |||||| ||| ||| || || Sbjct 1329267 CGAGGGATCGCCTCGTGCTTCGAAAATGTCTTTGTGGCCACTAAACTGGAGAGAGTAGTG 1329326 Query 107910 TATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGC 107969 || || ||||||||| | || ||||| ||||||||||| ||||| ||| | ||| ||||| Sbjct 1329327 TACGCGTCCTGGTCCCGGGTCCAAGCGGACCTGAACTGCATGGAGGACCTACTCAAGAGC 1329386 Query 107970 TCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAAT 108029 ||||| |||| ||| | |||| || ||||| || || |||||||| |||||||| Sbjct 1329387 AACGTGCCTTGGAGGTATCTCTTGAACACTTGCGGCACCGATTTCCCCATCAAGACCAAC 1329446 Query 108030 GCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTA 108089 |||||||| |||| |||| ||| | | || || || |||| |||||| || ||| | Sbjct 1329447 GCCGAGATTGTCCGAACCCTGAAGTTTCTAAACGGGAAAAACAATATGGAATCCGAGAAA 1329506 Query 108090 CCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTAC 108149 || ||| | ||| | ||||||||| |||| | | | ||| || | || | Sbjct 1329507 CCCTCTTCGATCAAGGAGGCTCGCTGGAAGTACCACCACCACGTGGAGAACTCGGTGATC 1329566 Query 108150 CCTACCAGCAAGATGAAGGACCCTCCC-CCTGATAATTTACCCATGTTCACAGGGAATGC 108208 | |||| | || ||| || |||||| || | | |||||||||||| || ||||| Sbjct 1329567 CGAACCACCGAGGAGAA-GAGCCTCCCGCCCCAGGCCTCACCCATGTTCACGGGCAATGC 1329625 Query 108209 CTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAG 108268 |||| |||||| | | | | |||||| ||| |||| || ||||| | | || Sbjct 1329626 CTATGTTGTGGTCACAAGGGACTTTGTTCAAGCCCTCTTTGAAAACCCGACGGCGCAGCA 1329685 Query 108269 ACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCA 108328 ||| | || ||| ||||| || || ||||| || ||||| ||||||||||||| || Sbjct 1329686 GCTGCTGGAGTGGTCAAAAGATACTTACAGCCCAGATGAACATATCTGGGCCACCCTCCA 1329745 Query 108329 GCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACAT 108388 || || | ||||| || || || ||| || |||||| | |||| || | Sbjct 1329746 CCGGATGCCAGGCATGCCAGGATCGGTGCCTTATAACAATAAGTATGAGGTCTCCGATGT 1329805 Query 108389 GACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGC 108448 | ||| | || || | || |||||| | |||| ||||| |||||||| | ||||| Sbjct 1329806 CAATGCTGTTGCTAGATTGGTGAAGTGGAACTACCTGGAGGGCGATGTCAGGAAAGGGGC 1329865 Query 108449 GCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGA 108508 || || | || || | || ||| | |||| |||| | || |||| || || Sbjct 1329866 ACCCTACCCGCCGTGTACGGGTGCCCACCAACGGGCGGTCTGTGTGTATGGGGTAGGTGA 1329925 Query 108509 CCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGA 108568 || ||||||| ||||| ||||| || || | || |||||||||||||| | ||| || Sbjct 1329926 TCTTCACTGGATGCTCCAAAACCACCATCTGCTAGCCAACAAGTTTGACCCAAAGGTAGA 1329985 Query 108569 TGATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTATGGGA 108624 ||| |||| | ||||| | || || || |||||| | ||| | | ||||||| Sbjct 1329986 TGAAAACGCAATCCAGTGTCTGGAGGAATATCTACGTTACAAGTCGGTGTATGGGA 1330041 >seq80053 Length=12979540 Score = 125 bits (138), Expect = 5e-24 Identities = 568/886 (64%), Gaps = 31/886 (3%) Strand=Plus/Minus Query 107688 CCACTGAGTAAAGAAG-AGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAA 107746 ||||| |||||||||| |||| || || || |||||||| || || ||||| || | || Sbjct 5109201 CCACTCAGTAAAGAAGAAGCT-GAATTTCCAATTGCCTATTCAATAGTGGTATATCACAA 5109143 Query 107747 GATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGT 107806 || || | |||| | || || || | | ||||| |||||||| |||||| | Sbjct 5109142 AATAGACATGCTTGATAGACTTCTAAGATCAATCTATGCTCCTCAGAATTATTACTGTAT 5109083 Query 107807 CCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTG 107866 || || || ||||| ||||| |||| | || || |||| ||| | ||||| Sbjct 5109082 TCATGTTGACAAAAAGTCTCCAGAATCTTTTCTGGCAGCAGTTAAGGGAATTGTGTCCTG 5109023 Query 107867 CTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAG 107926 ||| |||||||| || ||||| | |||| || || ||||| || ||| ||| Sbjct 5109022 TTTCAATAATGTCTTTATTGCCAGCCAATTGGAGAGTGTAGTGTATGCTTCGTGGAGCAG 5108963 Query 107927 AGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAG 107984 || || || ||||| ||||| ||| |||| | || ||| | ||| | | ||||| Sbjct 5108962 GGTACAGGCAGACCTCAACTGCATGAAAGA-TCTCTACAG-GAGAAGTACAAACTGGAAA 5108905 Query 107985 TACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTG 108044 || || | ||| || || | ||||| || || |||||||| || ||||| | Sbjct 5108904 TATTTGATAAATCTTTGTGGTATGGACTTTCCTATTAAGACCAACCAGGAAATGGTGGAG 5108845 Query 108045 GCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAG---GTACCTTCTGAGTCC 108101 | || | |||||| | ||||| | || ||||| | ||||| || | Sbjct 5108844 AAATTGAAAGCCCTAAAGGGTGAAAACAGCTTAGAAACTGAGAAAATGCCTTC-CAG--C 5108788 Query 108102 aaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAG 108161 ||| ||| || |||||| | | |||||| | | | ||| ||| | || Sbjct 5108787 AAAGAAATACGATGGAAAAAACACTATGAAATTGTTG----ATGGTAAGCTA--AAGAAC 5108734 Query 108162 ATG---------AAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTAT 108212 ||| || | ||||| ||| || | ||| | ||| | || | ||||||| Sbjct 5108733 ATGGGAATAGACAAACAACCTCCACCTCTTAGTACACCTGTTTTCTCTGGCAGTGCCTAT 5108674 Query 108213 TTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAAC-CCTAAATCCCAAAGACT 108271 ||||| | | | ||||| | |||| |||| ||| | |||||| | | | Sbjct 5108673 TTTGTTACTAGTAGGAGATTTGTAGAGTATGTGCTAGAAAACAGCAAAATCCTTGA-ATT 5108615 Query 108272 GGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCG 108331 ||||||||| |||||||| |||||||| || ||| || | ||||| || |||| | Sbjct 5108614 TATTGAATGGGCTAAAGACACGTATAGCCCTGATGAATACTTGTGGGCTACTATTCAAAG 5108555 Query 108332 TGCTCCGTGGA-TGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGA 108390 ||| || | | || || ||||| || | ||||||| || | || ||||||| Sbjct 5108554 -AATCCCTGAAGTTCCAGGGGCTGTTTCTTCCAGTGACAAGTATGACGTTTCTGACATGA 5108496 Query 108391 CTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGC 108450 ||| | |||||| | || |||||||| || || || ||||| | || || | Sbjct 5108495 ATGCTCTTGCCAGGTTTGTGAAGTGGCATTATTTTGAAGGGGATGTGTCAAAAGGTGCCC 5108436 Query 108451 CTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACC 108510 | ||| | || ||| |||||| ||| | | | | || | | || | || ||| Sbjct 5108435 CCTATCCTCCGTGCAATGGAATTCATGTGCGCTCTGTGTGTGTGTTTGGAGTGGGAGACT 5108376 Query 108511 TGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGA 108556 || ||||||| | |||| || || | || || ||||||||||| Sbjct 5108375 TGAACTGGATGTTAAAGAAACACCATTTATTTGCTAACAAGTTTGA 5108330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347674468735902