Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq94266 114 1e-20 seq54353 98.7 9e-16 seq78831 82.4 7e-11 >seq94266 Length=584714 Score = 114 bits (126), Expect = 1e-20 Identities = 116/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 23046 CCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCG 23105 |||||||||||||| || ||||| || ||||| || || || ||||| ||||| || | Sbjct 87685 CCACCTCGTCTTTGCTGGTATACTCCACGATTTCTGTGCACAGGTTGCTGCACTTGATGG 87744 Query 23106 TGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCG 23165 | |||| || ||||||||| || | ||| || || |||||||| |||||||| || | Sbjct 87745 TTCCCAGGTTCTGCTGGTTGCTCTTCCTATTACAAGAGTCCTTGTACAGCATGTAAGGGG 87804 Query 23166 TGCCCGTCTCGACCTGCGACTCGATGATCGC 23196 | || |||||| ||| ||||| ||||| || Sbjct 87805 TCCCGGTCTCGGTCTGAGACTCTATGATGGC 87835 Score = 98.7 bits (108), Expect = 9e-16 Identities = 114/154 (74%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 23342 TCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGC 23401 || || ||| |||| || ||||| || ||||| || || |||| || || | ||| ||| Sbjct 89246 TCCACCCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAGAGGTCTCTGGCTCGC 89305 Query 23402 ACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCAC 23461 |||||| || ||||||||||| |||| || | ||| || || | |||| ||||| Sbjct 89306 TGCTCCTCCTTCCCGGTGTTCTTCTTCAGGTCAAGAAACTCAAAAATGTCCAAGTGCCAT 89365 Query 23462 GGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 ||||| || || | |||||| || || ||||||| Sbjct 89366 GGCTCCAGATAGATGGCAAAGGCCCCGGGTCTCT 89399 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/188 (72%), Gaps = 6/188 (3%) Strand=Plus/Plus Query 22691 GGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCC 22750 |||| ||||||||| ||||||||||| ||||| ||||||||| ||||| | ||| Sbjct 84843 GGGCAGCCTTCGTAAGTTTCGTACGGCCCATACTCTTTGGCAAGTTCACAGCTGGATTCC 84902 Query 22751 AACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTT---CAATTCGGCGGCGGCGACG 22807 || || || ||||| || ||||||||||| | || ||| ||| | ||| ||| || Sbjct 84903 AAAGCACCATAATAAATCGTCTCGAAGATCTGCTGGTTCAACAACTGGGCCTCGG-GA-- 84959 Query 22808 CTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCG 22867 ||||| | || | ||||| | |||||| ||||||| || || || || || ||| Sbjct 84960 CTTTCAAAGGGGTATCTCATCAGGATGAACGCATCCGCCAGCCCTTGCACTCCAATGCCG 85019 Query 22868 ATCGGTCG 22875 || || || Sbjct 85020 ATGGGACG 85027 >seq54353 Length=924 Score = 98.7 bits (108), Expect = 9e-16 Identities = 114/154 (74%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 23342 TCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGC 23401 || || ||| |||| || ||||| || ||||| || || |||| || || | ||| ||| Sbjct 626 TCCACCCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAGAGGTCTCTGGCTCGC 685 Query 23402 ACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCAC 23461 |||||| || ||||||||||| |||| || | ||| || || | |||| ||||| Sbjct 686 TGCTCCTCCTTCCCGGTGTTCTTCTTCAGGTCAAGAAACTCAAAAATGTCCAAGTGCCAT 745 Query 23462 GGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 ||||| || || | |||||| || || ||||||| Sbjct 746 GGCTCCAGATAGATGGCAAAGGCCCCGGGTCTCT 779 >seq78831 Length=713705 Score = 82.4 bits (90), Expect = 7e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 57528 AATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAA 57587 ||||| |||||||||||||| || || | |||| || || || ||||||||||| ||| Sbjct 184776 AATCCTCGTAGATTTGTCATCTTCCCACTCCAATACCCGGATATATGGAACATGTATAAA 184835 Query 57588 AAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGT 57622 |||||| |||| || || ||||| | ||||| || Sbjct 184836 AAGGCACAAGCTTCCTTCTGGACAGCAGAAGAGGT 184870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444986180642160