Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq76943 86.0 1e-11 seq78831 84.2 4e-11 >seq76943 Length=1194919 Score = 86.0 bits (94), Expect = 1e-11 Identities = 115/156 (74%), Gaps = 3/156 (2%) Strand=Plus/Minus Query 35571 TTCACCTTATGGCTCTTCCTCCATGCCACA-TGACTGCTCAATTTTATGTGGCTAATGGA 35629 ||||| | |||||| | |||||||||||| | ||| || |||||||| ||||| Sbjct 632633 TTCAC-TAATGGCTTTGCCTCCATGCCACGCTCTGTGC-CAGTTTTATGTTCTAAATGGT 632576 Query 35630 GAATTGTCGTGCCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAAT 35689 ||| |||| ||||||||||||||| || ||||| | || | || ||||| |||||| Sbjct 632575 GAACTGTCTTGCCAGTTGTATCAGAGATCTGGAGACATGGGACTCGGGGTGCCTTTCAAT 632516 Query 35690 ATTGCATCATACTCTCTTCTGACTCATCTGATGGCC 35725 ||||| || || ||||| || || |||| ||| Sbjct 632515 ATTGCCAGTTATTCACTTCTCACGTATATGATTGCC 632480 >seq78831 Length=713705 Score = 84.2 bits (92), Expect = 4e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 |||||||||||||| || ||||| |||||||| ||| | || || | || || ||| Sbjct 196919 GTTGCCTTTGCTGCCGTGGAAGGGATCTTCTTCTCAGGTTCTTTTGCTGCTATATTTTGG 196978 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATT 102028 | ||||| |||||| | ||||||| || || | |||||||||| ||||| Sbjct 196979 CTGAAGAAGAGGGGTCTGATGCCTGGACTGACATTCTCCAATGAGCTCATT 197029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 987808642081965