Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq10001 111 2e-19 seq78831 102 1e-16 seq94266 87.8 2e-12 seq54353 87.8 2e-12 seq93491 86.0 8e-12 >seq10001 Length=4979691 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| || || | |||||||||||| |||||||| ||||||| || | ||| | Sbjct 1096739 CCTCATCTCTGCTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAACCCTCTCTTCT 1096798 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | | |||||| ||||| || || || || || |||||||||||||| ||||| ||||| | Sbjct 1096799 TCAACCAAAAGATGGATGCAAAGGAGCCAGAGAAGAAGATTCCTTCCACTGCTGCAAAAG 1096858 Query 33724 C 33724 | Sbjct 1096859 C 1096859 >seq78831 Length=713705 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| |||| ||||| | || || || || || ||||| ||||| || || | ||| | Sbjct 197042 CCTCATCTCGGCTAATGAGCTCATTGGAGAATGTCAGTCCAGGCATCAGACCCCTCTTCT 196983 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||||||||| | ||| || || || || |||||||| ||||| || |||||||||| Sbjct 196982 TCAGCCAAAATATAGCAGCAAAAGAACCTGAGAAGAAGATCCCTTCCACGGCAGCAAAGG 196923 Query 33724 CAATAAGTCTCTCTCC 33739 ||| | |||||| || Sbjct 196922 CAACCACTCTCTCCCC 196907 Score = 86.0 bits (94), Expect = 8e-12 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 34079 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 34138 ||| ||||| ||||||| || || || | ||||||||||||||| ||||| || || | Sbjct 184871 CACCTCTTCTGCTGTCCAGAAGGAAGCTTGTGCCTTTTTATACATGTTCCATATATCCGG 184812 Query 34139 ATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 34175 ||||||| |||||| || ||||||||| |||||| Sbjct 184811 GTATTGGAGTGGGAAGATGACAAATCTACGAGGATTT 184775 Score = 84.2 bits (92), Expect = 3e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 33966 AAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 34025 ||||||||||| || |||||||| |||||||||||||| |||| ||||| || || Sbjct 188828 AAATTTTCATTTACAATTCCATCGCTGGCTGCAAAAAAAGCCAGGACATGAGAGATGAAG 188769 Query 34026 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCAC 34081 |||||||| |||| | | || || ||||| | | | ||||| |||| ||| || Sbjct 188768 TATTTTTCTTCTGATTTCAGCTTGTTCCAGTGAGGAAAGTCTTTTGATAAATCAAC 188713 >seq94266 Length=584714 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322 || ||| |||||||| ||||||||||||||||| || || | || || ||||| | || Sbjct 89245 CTCCACCCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAGAGGTCTCTGGCTCG 89304 Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382 || ||||| || || || ||||| || || || || ||| | | ||| || | ||||| Sbjct 89305 CTGCTCCTCCTTCCCGGTGTTCTTCTTCAGGTCAAGAAACTCAAAAATGTCCAAGTGCCA 89364 Query 63383 CGGTTCCAAGTATATGGC 63400 || |||| || ||||| Sbjct 89365 TGGCTCCAGATAGATGGC 89382 >seq54353 Length=924 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322 || ||| |||||||| ||||||||||||||||| || || | || || ||||| | || Sbjct 625 CTCCACCCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAGAGGTCTCTGGCTCG 684 Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382 || ||||| || || || ||||| || || || || ||| | | ||| || | ||||| Sbjct 685 CTGCTCCTCCTTCCCGGTGTTCTTCTTCAGGTCAAGAAACTCAAAAATGTCCAAGTGCCA 744 Query 63383 CGGTTCCAAGTATATGGC 63400 || |||| || ||||| Sbjct 745 TGGCTCCAGATAGATGGC 762 >seq93491 Length=601793 Score = 86.0 bits (94), Expect = 8e-12 Identities = 93/123 (76%), Gaps = 8/123 (7%) Strand=Plus/Plus Query 188489 GTTACTTTCTATGATGCGCGTATC----GTTATACAAGCTTTCATGTTGACTACTGCAGT 188544 || |||||||||||| ||||| || |||||||||| || |||||||||| || Sbjct 31683 GTGACTTTCTATGAT----GTATCAGTTGTCTTACAAGCTTTTATTCTGACTACTGCTGT 31738 Query 188545 GTTTCTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAAC 188604 |||||||| |||||| | |||| | || || |||||||||||||| ||| | | | | Sbjct 31739 GTTTCTTGGGCTGACTGTGTATACTTTGCAGTCCAAGAGAGATTTCAGCAAATTCGGAGC 31798 Query 188605 AGG 188607 ||| Sbjct 31799 AGG 31801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628715238127440