Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq78831 98.7 9e-16 seq94266 87.8 2e-12 seq10001 82.4 7e-11 >seq78831 Length=713705 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || |||| || || || ||||| || ||||| | ||| ||||||| || | || || Sbjct 197040 TCATCTCGGCTAATGAGCTCATTGGAGAATGTCAGTCCAGGCATCAGACCCCTCTTCTTC 196981 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | |||||||||||||||||| ||||| || ||||| || || ||||| || ||||| || Sbjct 196980 AGCCAAAATATAGCAGCAAAAGAACCTGAGAAGAAGATCCCTTCCACGGCAGCAAAGGCA 196921 Query 11774 ACTACTCTTTCTCC 11787 || ||||| || || Sbjct 196920 ACCACTCTCTCCCC 196907 >seq94266 Length=584714 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| || ||||| | |||| | ||| || || || || || || ||||||||| Sbjct 83280 ACCTGAAACTCGCCAGAGAGAACTCGGCGTGTGTAGATGTTACTGGTGTAGGGTTCAATG 83339 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 |||||||| || | || || |||| ||||| ||||| |||||||| | | || ||| Sbjct 83340 GACTCATTGTTGCCCAAGATCTGAGCAGTAGAAGCAGTTGGCATTGGAGAAAGGAGTAGG 83399 Query 37258 CTATTTCT 37265 || ||||| Sbjct 83400 CTGTTTCT 83407 >seq10001 Length=4979691 Score = 82.4 bits (90), Expect = 7e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 11900 TATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAAT 11959 || |||||||| | | ||| |||||||||||||| || ||||||||||| || || || Sbjct 1099789 TAAGTATCTATGAGCAGACTGTACATTTCTGAATGTATGTTTTCCATAGCAATCTGGAAG 1099848 Query 11960 CCATAGAAACATCGTGCCTCTGAACACTGTACATC 11994 ||||||||||| || || |||| |||||| || Sbjct 1099849 CCATAGAAACAGCGAGCTTCTGTTACCTGTACTTC 1099883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 467704746899120