Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq93491 118 1e-21 seq78831 96.9 5e-15 seq94266 87.8 2e-12 seq54353 87.8 2e-12 >seq93491 Length=601793 Score = 118 bits (130), Expect = 1e-21 Identities = 143/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 9227 TTATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATC 9286 |||||| ||||| || |||| | || | | ||| |||| ||||| |||||||||||| Sbjct 34026 TTATTTTTTATTTAATGCTTCTAGTAGGCGCAGCAGGTGCAGGAACAAATTGATGATATC 33967 Query 9287 CAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGA 9346 ||||||| |||||| | || || | ||| ||||| || || || | || || ||| | Sbjct 33966 TAAGTAGAGATTGATGGCAGCCAATATATACTCTTCCGGAGACAGTCTGTGCATCAGTAA 33907 Query 9347 GTGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAG 9406 || ||||||||||| || ||||||||||| | || || || ||||| | | ||| Sbjct 33906 ATGAGTGTCATAGATGATAAATCCGCAGAACAGCAGCGCTCCCGCAGCAGCAAACAACAG 33847 Query 9407 CTCCACTGTTTCACT 9421 ||| | ||| ||||| Sbjct 33846 CTCTATTGTCTCACT 33832 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 |||||||| | ||| |||||||||||||| || || | |||||| ||||||| ||||| Sbjct 31801 CCTGCTCCGAATTTGCTGAAATCTCTCTTGGACTGCAAAGTATACACAGTCAGCCCAAGA 31742 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598 ||||| ||||||||||| || |||||||| | || || |||||||||||||| || Sbjct 31741 AACACAGCAGTAGTCAGAATAAAAGCTTGTAAGACAACTGATACATCATAGAAAGTCAC 31683 >seq78831 Length=713705 Score = 96.9 bits (106), Expect = 5e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| |||| ||||| | || ||||| || || ||||| ||||| || || | ||| | Sbjct 197042 CCTCATCTCGGCTAATGAGCTCATTGGAGAATGTCAGTCCAGGCATCAGACCCCTCTTCT 196983 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||||||||| | ||||| || || || ||||| || ||||| || || ||||||| Sbjct 196982 TCAGCCAAAATATAGCAGCAAAAGAACCTGAGAAGAAGATCCCTTCCACGGCAGCAAAGG 196923 Query 36300 CAATAAGTCTCTCTCC 36315 ||| | |||||| || Sbjct 196922 CAACCACTCTCTCCCC 196907 >seq94266 Length=584714 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 66056 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT 66115 || ||| |||||||| ||||||||||||||||| || || | || | ||||||| || Sbjct 89245 CTCCACCCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAGAGGTCTCTGGCTCG 89304 Query 66116 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCA 66175 || ||||| || || || ||||| || || || || ||| | | ||| || | ||||| Sbjct 89305 CTGCTCCTCCTTCCCGGTGTTCTTCTTCAGGTCAAGAAACTCAAAAATGTCCAAGTGCCA 89364 Query 66176 CGGTTCCAAGTATATGGC 66193 || |||| || ||||| Sbjct 89365 TGGCTCCAGATAGATGGC 89382 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| || | ||| || ||||||||||| | || || || || || || || |||| | Sbjct 98515 CACTGAACACTTTCTTGGTTTCTTTGTGCAAGTTGGAGACTGCGATCCTTGCTGCTAGGA 98574 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 ||||||| || || || | || || || || ||| | || || ||||| || |||| Sbjct 98575 TGGCATAGTCGGGGTGCTTGGTGGTGAGGGTTGCAGCTGTCTCAGCAGCCAGTGTATCCA 98634 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 ||| || ||||| || ||| | |||| || ||||| |||||||| Sbjct 98635 GTTCCACTGTTGTGACACCACTGTATAGACCCTGGATCACCTTCAT 98680 >seq54353 Length=924 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 66056 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT 66115 || ||| |||||||| ||||||||||||||||| || || | || | ||||||| || Sbjct 625 CTCCACCCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAGAGGTCTCTGGCTCG 684 Query 66116 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCA 66175 || ||||| || || || ||||| || || || || ||| | | ||| || | ||||| Sbjct 685 CTGCTCCTCCTTCCCGGTGTTCTTCTTCAGGTCAAGAAACTCAAAAATGTCCAAGTGCCA 744 Query 66176 CGGTTCCAAGTATATGGC 66193 || |||| || ||||| Sbjct 745 TGGCTCCAGATAGATGGC 762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657020808375320