Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq108923 127 2e-24 seq51508 87.8 2e-12 >seq108923 Length=1180579 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| | |||||||| || ||||| | || || ||||| || ||||| || ||| | Sbjct 1013761 CCGCCCCTTAAACGCAGGACCAAGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAC 1013702 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| | ||||| | ||| || || ||| |||||| | |||||||| ||||| Sbjct 1013701 AGGGTGCGCCCATCTTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGATCTGGAGGA 1013642 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||||||||| |||||| || | | || | ||||| ||||||||||| Sbjct 1013641 ATGCCTTCTTTGTCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACC 1013582 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | ||| | || ||||| ||||| ||||| || || || |||||| Sbjct 1013581 TCTAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCATA 1013534 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| || ||||| | || || ||||| || ||||| || ||| || |||| | Sbjct 1013521 CGCAGGACCAAGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCA 1013462 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || || ||| |||||| | |||||||| ||||| |||||||||||| Sbjct 1013461 TCTTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTG 1013402 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || |||||| || | | || | ||||| |||||||||| || | ||| | Sbjct 1013401 TCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACTTCTAGGGTGATG 1013342 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || ||||| ||||| ||||| || || || ||||| Sbjct 1013341 GTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 1013307 >seq51508 Length=10579796 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || || ||| ||||||| | ||||| || || || |||||||||||| Sbjct 7029859 TCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCTTTG 7029918 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || | ||||| ||||||| ||||| | ||| | Sbjct 7029919 TCCTGGATCTTAGCCTTGACATTCTCAATAGTGTCACTGGGCTCAACCTCTAGGGTGATG 7029978 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||||||||||| || || || || || |||||| Sbjct 7029979 GTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATA 7030014 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || || ||| ||||||| | ||||| || || || |||||||||||| Sbjct 7030087 TCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCTTTG 7030146 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || | ||||| ||||||| ||||| | ||| | Sbjct 7030147 TCCTGGATCTTAGCCTTGACATTCTCAATAGTGTCACTGGGCTCAACCTCTAGGGTGATG 7030206 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||||||||||| || || || || || |||||| Sbjct 7030207 GTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATA 7030242 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || || ||| ||||||| | ||||| || || || |||||||||||| Sbjct 7030315 TCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCTTTG 7030374 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || | ||||| ||||||| ||||| | ||| | Sbjct 7030375 TCCTGGATCTTAGCCTTGACATTCTCAATAGTGTCACTGGGCTCAACCTCTAGGGTGATG 7030434 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| ||||| || || || || || ||||| Sbjct 7030435 GTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 7030469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495195745381600