Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq10001 120 4e-22 seq78831 111 2e-19 seq94266 93.3 6e-14 seq54353 93.3 6e-14 >seq10001 Length=4979691 Score = 120 bits (132), Expect = 4e-22 Identities = 101/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| || || |||||||| ||||| |||||||| ||||||| || | ||| | Sbjct 1096739 CCTCATCTCTGCTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAACCCTCTCTTCT 1096798 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | | |||||| ||||| ||||| || ||||| |||||||||||||| ||||| ||||| | Sbjct 1096799 TCAACCAAAAGATGGATGCAAAGGAGCCAGAGAAGAAGATTCCTTCCACTGCTGCAAAAG 1096858 Query 50102 CAAC 50105 | || Sbjct 1096859 CTAC 1096862 >seq78831 Length=713705 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| |||| ||||| || || ||||| || || ||||| ||||| || || | ||| | Sbjct 197042 CCTCATCTCGGCTAATGAGCTCATTGGAGAATGTCAGTCCAGGCATCAGACCCCTCTTCT 196983 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||||||||| | ||||| || || || |||||||| ||||| || || ||||||| Sbjct 196982 TCAGCCAAAATATAGCAGCAAAAGAACCTGAGAAGAAGATCCCTTCCACGGCAGCAAAGG 196923 Query 50102 CAACAAGTCTCTCTCC 50117 |||| | |||||| || Sbjct 196922 CAACCACTCTCTCCCC 196907 Score = 84.2 bits (92), Expect = 3e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 50458 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 50517 || ||||| ||||||| || || || | ||||||||||||||| ||||| || || | Sbjct 184870 ACCTCTTCTGCTGTCCAGAAGGAAGCTTGTGCCTTTTTATACATGTTCCATATATCCGGG 184811 Query 50518 TATTGGATTGGGAAAATAACAAATCTATTTGGATTT 50553 ||||||| |||||| || ||||||||| |||||| Sbjct 184810 TATTGGAGTGGGAAGATGACAAATCTACGAGGATTT 184775 >seq94266 Length=584714 Score = 93.3 bits (102), Expect = 6e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 || |||||||| ||||||||||||||||| || || | || || ||||||| || ||| Sbjct 89249 ACCCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAGAGGTCTCTGGCTCGCTGC 89308 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 ||||| || || || ||||| || || || || ||| | | ||| || | ||||| || Sbjct 89309 TCCTCCTTCCCGGTGTTCTTCTTCAGGTCAAGAAACTCAAAAATGTCCAAGTGCCATGGC 89368 Query 80059 TCCAAGTATATGGC 80072 |||| || ||||| Sbjct 89369 TCCAGATAGATGGC 89382 >seq54353 Length=924 Score = 93.3 bits (102), Expect = 6e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 || |||||||| ||||||||||||||||| || || | || || ||||||| || ||| Sbjct 629 ACCCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAGAGGTCTCTGGCTCGCTGC 688 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 ||||| || || || ||||| || || || || ||| | | ||| || | ||||| || Sbjct 689 TCCTCCTTCCCGGTGTTCTTCTTCAGGTCAAGAAACTCAAAAATGTCCAAGTGCCATGGC 748 Query 80059 TCCAAGTATATGGC 80072 |||| || ||||| Sbjct 749 TCCAGATAGATGGC 762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717011623097720