Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq10001 91.5 1e-13 >seq10001 Length=4979691 Score = 91.5 bits (100), Expect = 1e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 13563 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTA 13622 || || || || ||||| || || ||||| | |||| || |||||||||||||| || Sbjct 1095040 TTTGACATTACTCCCATCTTCTGGTATTCTCCTACTCGCTTCTCAAAGAAGTTAGTCTTG 1095099 Query 13623 CCTTCCAGTGATATATTTTCCATAAAATCAAATGGATT 13660 ||||||||||| ||||| ||||| || ||||||||||| Sbjct 1095100 CCTTCCAGTGAGATATTCTCCATGAAGTCAAATGGATT 1095137 Score = 82.4 bits (90), Expect = 7e-11 Identities = 80/101 (79%), Gaps = 4/101 (4%) Strand=Plus/Plus Query 14141 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14200 |||||| ||||| || || | || |||||||| || ||||||||||||||||| ||||| Sbjct 1099785 AATGTAAGTATCTATGAGCAGACTGTACATTTCTGAATGTATGTTTTCCATAGCAATCTG 1099844 Query 14201 AAAACCATAAAAGCATCTAGCTTCCG--ACCATTGTACTTC 14239 || ||||| || || | |||||| | ||| |||||||| Sbjct 1099845 GAAGCCATAGAAACAGCGAGCTTCTGTTACC--TGTACTTC 1099883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478888338078200