Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq10001 84.2 2e-11 >seq10001 Length=4979691 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 13929 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTG 13988 |||||| ||||| || || | || |||||||| || ||||||||||| ||||| ||||| Sbjct 1099785 AATGTAAGTATCTATGAGCAGACTGTACATTTCTGAATGTATGTTTTCCATAGCAATCTG 1099844 Query 13989 AAAACCATAAAAACATCTAGCTTCTG 14014 || ||||| ||||| | |||||||| Sbjct 1099845 GAAGCCATAGAAACAGCGAGCTTCTG 1099870 Score = 82.4 bits (90), Expect = 7e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 13351 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTA 13410 || || || || ||||| || || ||||| | |||| || ||||| |||||||| || Sbjct 1095040 TTTGACATTACTCCCATCTTCTGGTATTCTCCTACTCGCTTCTCAAAGAAGTTAGTCTTG 1095099 Query 13411 CCTTCCAGTGATATATTTTCCATAAAATCGAATGGATT 13448 ||||||||||| ||||| ||||| || || |||||||| Sbjct 1095100 CCTTCCAGTGAGATATTCTCCATGAAGTCAAATGGATT 1095137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477751132005720