Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq108923 84.2 2e-11 >seq108923 Length=1180579 Score = 84.2 bits (92), Expect = 2e-11 Identities = 129/184 (70%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 42931 TTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGT 42990 ||||| ||||||| || || | || |||| || || |||||||| ||||| | ||| Sbjct 1013485 TTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGC 1013426 Query 42991 TGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCG 43050 ||||| | || | |||||||| || ||| | ||||| | ||| ||||| Sbjct 1013425 TGATCTGGAGGAATGCCTTCTTTGTCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCA 1013366 Query 43051 CCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 | | ||| || |||| || || ||||| || || | ||||||||||| || |||||| Sbjct 1013365 CTGGGCTCCACTTCTAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCATT 1013306 Query 43111 TTCT 43114 |||| Sbjct 1013305 TTCT 1013302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380718781217334